Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30898
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33360.1 68417.m04743 terpene cyclase/mutase-related low simi...    29   2.4  
At4g26450.1 68417.m03805 expressed protein                             28   5.6  
At1g11680.1 68414.m01341 obtusifoliol 14-demethylase (CYP51) ide...    28   5.6  
At3g13180.1 68416.m01649 NOL1/NOP2/sun family protein / antiterm...    27   9.8  

>At4g33360.1 68417.m04743 terpene cyclase/mutase-related low
           similarity to squalene-hopene cyclase from Zymomonas
           mobilis [SP|P33990]
          Length = 344

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 596 KVENVGTENEGIKVKGFYEYVGPRRCH-LQSRLHC*RKRVSLLTELT 733
           K+ N  TEN  I V G   Y+G R CH L  R H  R  V   ++L+
Sbjct: 4   KMPNTETENMKILVTGSTGYLGARLCHVLLRRGHSVRALVRRTSDLS 50


>At4g26450.1 68417.m03805 expressed protein
          Length = 1248

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 560 ETENKI--LAEEAGKVENVGTENEGIKVKGFYEYVGPRRCH 676
           +TEN+     + +GK ++ G EN+ ++     +Y+   +CH
Sbjct: 368 QTENRCETRGQSSGKADSTGDENDQVEDFALVQYIENSKCH 408


>At1g11680.1 68414.m01341 obtusifoliol 14-demethylase (CYP51)
           identical to obtusifoliol 14-demethylase (GI:14624983)
           [Arabidopsis thaliana]
          Length = 488

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +2

Query: 62  ALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDPSRDNSGRYIPDNSGAYN 232
           ++ A  GK        + +T   F  +      DP  YDP R + GR     +GA++
Sbjct: 366 SVTARDGKTYDIPKGHIVATSPAFANRLPHIFKDPDTYDPERFSPGREEDKAAGAFS 422


>At3g13180.1 68416.m01649 NOL1/NOP2/sun family protein /
           antitermination NusB domain-containing protein low
           similarity to SP|P36929 SUN protein (FMU protein)
           {Escherichia coli}; contains Pfam profiles PF01189:
           NOL1/NOP2/sun family, PF01029: NusB family
          Length = 523

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 35  LAICLSLTVALAAETGKYTPFQYNRVYSTVSPF 133
           +A  LS  V L+AET K +P  + R   T  PF
Sbjct: 1   MAQLLSFRVYLSAETQKASPGSFKRTQKTRKPF 33


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,247,486
Number of Sequences: 28952
Number of extensions: 238010
Number of successful extensions: 737
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)