Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30896
         (754 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8H931 Cluster: Putative UDP-glucose 4-epimerase; n=5; ...    36   1.4  
UniRef50_Q8STU9 Cluster: Similarity to HYPOTHETICAL INTEGRAL MEM...    35   1.9  
UniRef50_A0E8U5 Cluster: Chromosome undetermined scaffold_83, wh...    34   4.3  

>UniRef50_Q8H931 Cluster: Putative UDP-glucose 4-epimerase; n=5;
           Oryza sativa|Rep: Putative UDP-glucose 4-epimerase -
           Oryza sativa subsp. japonica (Rice)
          Length = 408

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = -1

Query: 547 RSKLQKKSVCVRSDARLEFTGYKKLNETIREIVLYYDNTIH 425
           +  L+K     R DA + F G K + E++++ +LYYDN+++
Sbjct: 76  KGALEKVFASTRFDAVVHFAGLKAVGESVQKPLLYYDNSVN 116


>UniRef50_Q8STU9 Cluster: Similarity to HYPOTHETICAL INTEGRAL
           MEMBRANE PROTEIN YA35_SCHPO; n=1; Encephalitozoon
           cuniculi|Rep: Similarity to HYPOTHETICAL INTEGRAL
           MEMBRANE PROTEIN YA35_SCHPO - Encephalitozoon cuniculi
          Length = 393

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +3

Query: 21  INGFLFKCNQCRRCHSSLIKLDPIIQQCFNNFCYCSYF*IKLPIYVYNFWSLLL*NR 191
           I G LF  + C  C S+ I   P +   FN + +     + LP+  + ++SLL+ NR
Sbjct: 191 IRGTLF-LSLCGLCRSNSILFAPFVMYPFNRYVFIRIAVVLLPLAAFQYYSLLMINR 246


>UniRef50_A0E8U5 Cluster: Chromosome undetermined scaffold_83, whole
           genome shotgun sequence; n=6; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_83,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 271

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 216 ENYGDQNRTSMSHEMRYAPDCACHTKCAPGCCAGSPPQS 332
           +NY    R S   ++ + P  + +T C    C  SPPQS
Sbjct: 41  QNYNLPKRASSQFKIHHLPSISSNTTCCSNSCTSSPPQS 79


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 735,879,331
Number of Sequences: 1657284
Number of extensions: 14821081
Number of successful extensions: 31995
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31982
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62146450145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)