Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30896
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   5.0  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    26   6.6  
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    26   6.6  
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    26   6.6  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    25   8.8  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    25   8.8  
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    25   8.8  

>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 515 PLRRTTGVYWI*KIKRNNTRNSSILRQHDTLQIINKLTRHKTND 384
           PLR T+  Y++    +NN  N+S L Q + L+ + +    K +D
Sbjct: 266 PLRETSNPYFLRDFLKNNA-NTSTLGQSEQLRYLEEALSLKLSD 308


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
 Frame = +3

Query: 474 NFLYPVNSSRA--SERTHTLFFWSLLL*NRFTYIGPGYENYGD 596
           +FLY     RA  S  THT   W   L  +  +  P Y  Y D
Sbjct: 483 SFLYNSERERAQASVSTHTRCIWDYFLSRKDEFKNPNYVPYDD 525


>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 376 IC*SFVLCLVNLLIICSVSCCRNIELFLVLFRLIFYIQ 489
           +C  F   L+ +L ICS+ C   +  FLV F L   I+
Sbjct: 1   MCPLFKTYLLYILKICSIPCLAYVVNFLVCFVLFTNIK 38


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 276 CACHTKCAPGCCAGSPPQSLVLIARFSHYC 365
           C   T     C   SPP +LV+     H+C
Sbjct: 268 CGAATDLTLNCLKSSPPNALVIALCCHHHC 297


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 538 LQKKSVCVRSDARLEFTGYKKLNETIREIVLYYDNT 431
           L+  ++C R   + E   Y  LN+ IR ++L YD T
Sbjct: 106 LENGALCERDTFQGERCLYGALNDNIRRMLLSYDIT 141


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 275 LRMSHEMRAGLLRRQSATKPRTDRAFL 355
           L + H+   GLL R+ A  P+T++A L
Sbjct: 53  LLLLHQFHTGLLFRKIAELPKTEQAIL 79


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 151 FMYIIFGVYSFRIDLHI 201
           F  ++FG+YSF + LH+
Sbjct: 21  FFLVVFGLYSFTLILHL 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,090,220
Number of Sequences: 5004
Number of extensions: 64859
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)