Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30896
         (754 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)                       32   0.57 
SB_49559| Best HMM Match : Ion_trans_2 (HMM E-Value=0.013)             29   3.1  
SB_18991| Best HMM Match : RVT_1 (HMM E-Value=2.8e-34)                 29   5.4  
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)                   28   7.1  
SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   7.1  

>SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)
          Length = 521

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 349 VSLIIVFSYIC*SFVLCLVNLLIICSVSCCRNIELFLVLFRLI 477
           VSL I+       FVLC  +    C+V+CC    LF VL+ ++
Sbjct: 93  VSLYILRVMFVSLFVLCTCHRACSCNVACCVRAMLFFVLYCIV 135


>SB_49559| Best HMM Match : Ion_trans_2 (HMM E-Value=0.013)
          Length = 201

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 349 VSLIIVFSYIC*SFVL-CLVNLLIICSVSCCRNI 447
           V + + F Y     VL CLVNLL++CS    RN+
Sbjct: 131 VGVFLAFPYFTGFCVLACLVNLLVLCSEKGYRNV 164


>SB_18991| Best HMM Match : RVT_1 (HMM E-Value=2.8e-34)
          Length = 899

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = -3

Query: 713 GFVADCR---AQQPGVTCDNAFRVTCAIRRITHFV-*HASTILVPIIFIPRAYICKSIL 549
           GF  DC     Q    TC +AF     IRRI  F+   A+  LV  + I R   C S+L
Sbjct: 540 GFWFDCNFKFEQHITKTCQSAFYSIFNIRRIRKFISKDAAKTLVQALVISRLDYCNSLL 598


>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
          Length = 1189

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
 Frame = +3

Query: 273 DC--ACHTKCAPGCCAGSPP 326
           DC  +C+ +C P CC+ +PP
Sbjct: 937 DCHFSCYPQCTPECCSTTPP 956


>SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 764

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 33  LFKCNQCRRCHSSLIKLDPIIQQCFNNFCYCSYF 134
           LF C++  R  +S IK   + +  ++ FC   YF
Sbjct: 366 LFICDEAHRLKNSAIKTTTVAKAFYDKFCKAVYF 399


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,299,884
Number of Sequences: 59808
Number of extensions: 487464
Number of successful extensions: 1111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)