Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30896
         (754 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP...    31   0.62 
At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative / UDP...    30   1.4  
At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family pr...    29   4.4  
At1g64440.1 68414.m07304 UDP-glucose 4-epimerase, putative / UDP...    28   5.8  
At5g42840.1 68418.m05221 DC1 domain-containing protein contains ...    28   7.7  
At4g10370.1 68417.m01702 DC1 domain-containing protein contains ...    28   7.7  

>At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative /
           UDP-galactose 4-epimerase, putative / Galactowaldenase,
           putative similar to UDP-galactose 4-epimerase from
           Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
           GI:3021357 [AJ005082]
          Length = 351

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -1

Query: 547 RSKLQKKSVCVRSDARLEFTGYKKLNETIREIVLYYDNTI 428
           RS L+K     + DA + F G K + E++ + +LYY+N +
Sbjct: 68  RSALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNL 107


>At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative /
           UDP-galactose 4-epimerase, putative / Galactowaldenase,
           putative similar to UDP-galactose 4-epimerase from
           Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
           GI:3021357 [AJ005082]
          Length = 350

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 547 RSKLQKKSVCVRSDARLEFTGYKKLNETIREIVLYYDNTI 428
           R  L+K     + DA + F G K + E++ + +LYY+N I
Sbjct: 67  RPALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNI 106


>At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain, weak hit to PF01661: Appr-1-p
           processing enzyme family
          Length = 912

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 39  KCNQCRRCHSSLIKLDPIIQQCFNNF 116
           +CN+CR  H ++ KL   ++ C + F
Sbjct: 871 RCNRCRSAHPNIPKLKSHVRSCHSQF 896


>At1g64440.1 68414.m07304 UDP-glucose 4-epimerase, putative /
           UDP-galactose 4-epimerase, putative / Galactowaldenase,
           putative similar to UDP-galactose 4-epimerase from
           Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
           GI:3021357 [AJ005082] (Plant Sci. 142, 147-154 (1999))
          Length = 348

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 538 LQKKSVCVRSDARLEFTGYKKLNETIREIVLYYDNTI 428
           L+K     + DA + F G K + E++ + +LYY+N +
Sbjct: 70  LEKVFSETKFDAVMHFAGLKAVGESVAKPLLYYNNNL 106


>At5g42840.1 68418.m05221 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 671

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 51  CRRCHSSLIKLDPIIQQCFNNFCYCSYF 134
           C+ C      L P   + ++N CYCSY+
Sbjct: 620 CKNCQCRC--LGPFFVKDYDNICYCSYY 645


>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 687

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 677 VTCDNAFRVTCAIRRITHFV*HASTILVPIIFIP 576
           +TC+ +    CA+R++  F+ H  +   P+ F P
Sbjct: 201 LTCNLSMHPVCAMRKVPFFIDHPKSHPHPLTFFP 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,865,360
Number of Sequences: 28952
Number of extensions: 326875
Number of successful extensions: 656
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)