Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30894
(710 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g57490.1 68418.m07184 porin, putative similar to 36kDA porin ... 62 3e-10
At3g01280.1 68416.m00035 porin, putative similar to SP|P42055 34... 62 4e-10
At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34... 53 2e-07
At5g37610.1 68418.m04530 hypothetical protein 33 0.19
At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34... 32 0.43
At2g36340.1 68415.m04460 DNA-binding storekeeper protein-related... 29 2.3
At3g13610.1 68416.m01713 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 3.0
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 28 7.0
At4g30810.1 68417.m04365 serine carboxypeptidase S10 family prot... 27 9.3
At4g25920.1 68417.m03727 expressed protein contains Pfam profile... 27 9.3
At3g17365.1 68416.m02219 expressed protein low similarity to PIR... 27 9.3
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ... 27 9.3
>At5g57490.1 68418.m07184 porin, putative similar to 36kDA porin II
[Solanum tuberosum] GI:515360; contains Pfam profile
PF01459: Eukaryotic porin
Length = 274
Score = 62.5 bits (145), Expect = 3e-10
Identities = 49/207 (23%), Positives = 96/207 (46%), Gaps = 1/207 (0%)
Frame = +1
Query: 85 APPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKF 264
+P +AD+GKKA D+ +K Y F K L S +G EF + T ++ FG +S+ +
Sbjct: 4 SPAPFADIGKKAKDLLNKDYIFD-HKFTLTMLSATGTEFVA--TGLKKDDFFFGDISTLY 60
Query: 265 AVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDT 444
K K ++ ++++T +T+++ + + K + K+GKL + +
Sbjct: 61 --KGQNTIVDLKIDSHSSVSTKVTLKNLLPSA-KAVISFKIPDH---KSGKLDVQYVHPH 114
Query: 445 VAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQS-GDFALH 621
+N+++ L+ P++D++A + Q G FDT + +K N +G+ + G A
Sbjct: 115 ATLNSSIGLN-PTPLLDLSATIGSQNVCLGGEVSFDTASSSLTKYNAGIGFNNQGVSAAL 173
Query: 622 TNVDNGKDFGGSIYQKVSDKLDCGVSM 702
D G+ + V+ G +
Sbjct: 174 ILEDKGESLRATYVHTVNPTTSFGAEL 200
>At3g01280.1 68416.m00035 porin, putative similar to SP|P42055 34
kDa outer mitochondrial membrane protein porin
(Voltage-dependent anion-selective channel protein)
(VDAC) {Solanum tuberosum}; contains Pfam profile
PF01459: Eukaryotic porin
Length = 276
Score = 62.1 bits (144), Expect = 4e-10
Identities = 50/199 (25%), Positives = 87/199 (43%)
Frame = +1
Query: 88 PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFA 267
P Y ++GKKA D+ K H K + T S +GV TS T ++ + G ++ F
Sbjct: 5 PGLYTEIGKKARDLLYKD-HNSDQKFSITTFSPAGVAITS--TGTKKGDLLLGDVA--FQ 59
Query: 268 VKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTV 447
+ +T K TD+T T+ D+ A GL+ Q +GK++ + ++
Sbjct: 60 SRRKNITTDLKVCTDSTFLITATV-DEAAPGLRSIFSFKVPDQN---SGKVELQYLHEYA 115
Query: 448 AVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTN 627
++T++ L P V+ + V+ G FDT+ F+K N L + D
Sbjct: 116 GISTSMGLT-QNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLT 174
Query: 628 VDNGKDFGGSIYQKVSDKL 684
V++ D + Y + + L
Sbjct: 175 VNDKGDLLNASYYHIVNPL 193
>At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34
kDa outer mitochondrial membrane protein porin
(Voltage-dependent anion-selective channel protein)
(VDAC) {Solanum tuberosum}; contains Pfam profile
PF01459: Eukaryotic porin
Length = 276
Score = 52.8 bits (121), Expect = 2e-07
Identities = 45/177 (25%), Positives = 79/177 (44%)
Frame = +1
Query: 88 PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFA 267
P + D+GKKA D+ ++ Y+ K + T S SGV TS T+ ++ G +++++
Sbjct: 5 PGLFTDIGKKAKDLLTRDYNSDQ-KFSISTYSASGVALTS--TALKKGGVHAADVATQYK 61
Query: 268 VKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTV 447
K+ F K +TD+++ T +T+ + I K + P + KL+ + +D
Sbjct: 62 YKN--ALFDVKIDTDSSVLTTVTLTE-ILPSTK-AIASFKVPD--YNSAKLEVQYFHDHA 115
Query: 448 AVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFAL 618
V L P++D+ A L G +DT F+K N + D L
Sbjct: 116 TVTAAAALK-QNPLIDITATLGSPVISFGAEAGYDTTSKTFTKYNAGISVTKPDACL 171
>At5g37610.1 68418.m04530 hypothetical protein
Length = 163
Score = 33.1 bits (72), Expect = 0.19
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Frame = +1
Query: 478 AGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKD-FGG 654
A P++ +AV W G D +K N L + D ++D F
Sbjct: 16 ANPILSFSAVFGNDFWRFGFELTLDLVNRIITKANTVLSLITEDTTTTFSIDKKASLFTA 75
Query: 655 SIYQKVSDKLDCGVSMKW 708
S YQ++ K CG K+
Sbjct: 76 SYYQRLHSKTVCGAEAKY 93
>At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34
kDa outer mitochondrial membrane protein porin
(Voltage-dependent anion-selective channel protein)
(VDAC) {Solanum tuberosum}; contains Pfam profile
PF01459: Eukaryotic porin
Length = 226
Score = 31.9 bits (69), Expect = 0.43
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 88 PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSN 222
P +AD+GK A D+ ++ Y K + T S SGV TS N
Sbjct: 5 PGLFADIGKYAKDLLTRDYSTDQ-KFSISTNSVSGVALTSTALKN 48
>At2g36340.1 68415.m04460 DNA-binding storekeeper protein-related
contains similarity to storekeeper protein [Solanum
tuberosum] gi|14268476|emb|CAC39398; contains PF04504:
Protein of unknown function, DUF573
Length = 414
Score = 29.5 bits (63), Expect = 2.3
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = +1
Query: 304 NTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAG 483
N+D+TL + ++ + + L T T T+T L S + + + N +L + G
Sbjct: 14 NSDDTLTRNREVEVEAMLSRRKQLRTTTTRTTTTRTTPLSLSSSASKMNWSKNDELVILG 73
Query: 484 PVVDV--AAVLNYQG-WLAGVHTQFDTQKAKFSK 576
+VD L+Y+ W A D +AKFSK
Sbjct: 74 GIVDYENETKLSYRSDWDALYRYIKDCVEAKFSK 107
>At3g13610.1 68416.m01713 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to desacetoxyvindoline
4-hydroxylase [Catharanthus roseus][GI:1916643],
flavonol synthase 1 [SP|Q96330]; contains PF03171
2OG-Fe(II) oxygenase superfamily domain
Length = 361
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -1
Query: 359 PAAILSWIVMSVANVLSVFHFSVKVKP*SFTANLEERLPKTFPLSWLEVIPLVN-STPD 186
PA + ++V V + +K P + LEERL F E IP+++ S PD
Sbjct: 13 PAEVTDFVVYKGNGVKGLSETGIKALPEQYIQPLEERLINKFVNETDEAIPVIDMSNPD 71
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 27.9 bits (59), Expect = 7.0
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 76 TDMAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKS--ESGVEFTSGITSNQESGK 237
T ++ P ++ G+ A + K +FG LDL K +SG+ +S ITS SGK
Sbjct: 268 TSLSAPAISNGGRDAASL--KTTNFGSSALDLVKKKLHDSGMPVSSTITSEANSGK 321
>At4g30810.1 68417.m04365 serine carboxypeptidase S10 family protein
similar to serine-type carboxypeptidase (SP:P55748)
[Hordeum vulgare]
Length = 479
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 288 SQAIVFHCKFGGKAAKNLSAFLVGGDPAGEFNTRLAL 178
S+AIV H + K + NL ++VG +F+ RL L
Sbjct: 196 SEAIVKHNQGSDKNSINLKGYMVGNGLMDDFHDRLGL 232
>At4g25920.1 68417.m03727 expressed protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 390
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 91 PYYADLGKKANDVFSKGYHFGVFKLDLKT 177
P + G K N ++ GY+FGV+ L KT
Sbjct: 330 PASSSPGLKPNCIYFVGYNFGVYDLTTKT 358
>At3g17365.1 68416.m02219 expressed protein low similarity to
PIR|I46078 endothelin converting enzyme from Bos
primigenius taurus
Length = 239
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -2
Query: 619 GEQSHQIGNLEQSCSWRTLLFVYQTGCVHQPANPGSLVLLQRLQLD 482
G +++ ++SCSW T L V QP + L + L LD
Sbjct: 159 GAPIYRLRLFKESCSWTTKLHVIDKSLTDQPLDTPKWELTKPLPLD 204
>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 578
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -1
Query: 416 FPVLVPVCGAKVPSRVTLRPAAILSWIVMS-VANVLSVFHFSVKVKP*SFTANLE 255
FP+ V A +P T PA + W+V+S + VL + + + + +F A +E
Sbjct: 431 FPLKRAVADALLPHLETATPAELCQWLVLSDMYGVLKIREYCLDLVACNFEAFVE 485
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,402,441
Number of Sequences: 28952
Number of extensions: 322899
Number of successful extensions: 871
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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