Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30889
         (762 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Z5J9 Cluster: Putative uncharacterized protein; n=3; ...    36   0.83 
UniRef50_Q54WY3 Cluster: Putative uncharacterized protein; n=1; ...    35   1.9  
UniRef50_UPI00015B43B9 Cluster: PREDICTED: similar to retrotrans...    34   3.3  
UniRef50_Q40K45 Cluster: Sensor protein; n=18; Rickettsiales|Rep...    34   4.4  
UniRef50_Q3SE90 Cluster: UNC119 homologue, putative; n=10; Oligo...    34   4.4  
UniRef50_UPI00015B4424 Cluster: PREDICTED: similar to retrotrans...    33   7.7  

>UniRef50_Q4Z5J9 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 504

 Score = 36.3 bits (80), Expect = 0.83
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = +1

Query: 481 NNNTCIIMCKYSKIIQS*YRLLSKMPKERYYFMNKSFL 594
           NNN+C++  K S ++ +     SK  K+ YYFMNKSF+
Sbjct: 286 NNNSCLLKKKKSSLLSN----FSKKNKKGYYFMNKSFV 319


>UniRef50_Q54WY3 Cluster: Putative uncharacterized protein; n=1;
            Dictyostelium discoideum AX4|Rep: Putative
            uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1436

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +1

Query: 481  NNNTCIIMCKYSKIIQS*YRLLSKMPKERYYFMNKSFLYRS-VSVIFCF 624
            NN + II+C  S +I+    ++S +P     ++NKS  YR+ ++V F F
Sbjct: 871  NNPSVIIVCDNSLLIEGKSEIISTVPNSNNQYINKSITYRAKITVPFLF 919


>UniRef50_UPI00015B43B9 Cluster: PREDICTED: similar to
           retrotransposon protein, putative, Ty1-copia subclass;
           n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
           retrotransposon protein, putative, Ty1-copia subclass -
           Nasonia vitripennis
          Length = 1148

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 609 RYFLFYIS--FKCCRIYCISL*TDTCNFFCEFIFNMKNKVENLFIKQFKGCR 758
           RYFL ++    KC RI+CI   ++T +   EF+    N VEN F K+ K  R
Sbjct: 402 RYFLTFVDDYSKCTRIFCIKNKSETASCLKEFV----NLVENKFNKKVKKLR 449


>UniRef50_Q40K45 Cluster: Sensor protein; n=18; Rickettsiales|Rep:
           Sensor protein - Ehrlichia chaffeensis str. Sapulpa
          Length = 828

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = +1

Query: 394 ETLNVDVFPCGDLVPYACVECKIEFPIQ*NNNTCIIMCKYSKIIQS*YRLLSKMPKERYY 573
           + LN  + PC    P A ++C  +  I  +NNT   + K+SK     Y L S   K + Y
Sbjct: 319 DILNYHLHPCFTEAPIAILQCNTDGKILKSNNTLKRLVKHSKEYIFEYILPSYNKKIKKY 378

Query: 574 FMN 582
           F N
Sbjct: 379 FQN 381


>UniRef50_Q3SE90 Cluster: UNC119 homologue, putative; n=10;
           Oligohymenophorea|Rep: UNC119 homologue, putative -
           Paramecium tetraurelia
          Length = 187

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -1

Query: 528 LNNFTILTHYYTRVIILLNRKFDFTFDARIWDEISAWEHVH 406
           + NFTI+  +Y R ++L  R ++F F   I +  + WEH++
Sbjct: 102 IKNFTIIERHYFRNVLL--RSYEFQFPFCIPNSTNTWEHIY 140


>UniRef50_UPI00015B4424 Cluster: PREDICTED: similar to
           retrotransposon protein, putative, unclassified,
           partial; n=4; Nasonia vitripennis|Rep: PREDICTED:
           similar to retrotransposon protein, putative,
           unclassified, partial - Nasonia vitripennis
          Length = 1079

 Score = 33.1 bits (72), Expect = 7.7
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 609 RYFLFYIS--FKCCRIYCISL*TDTCNFFCEFIFNMKNKVENLFIKQFKGCR 758
           +YFL ++    KC RI+CI    +T +   EF+    N VEN F K+ K  R
Sbjct: 370 KYFLTFVDDYSKCTRIFCIKSKAETASCLKEFV----NLVENKFNKKVKKLR 417


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 702,094,077
Number of Sequences: 1657284
Number of extensions: 13802606
Number of successful extensions: 29518
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29509
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63381147830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)