Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30889
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   2.9  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    26   6.7  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   6.7  

>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 164 HSLHQIRFTYHSLWGLVSDPRKTLPTD 84
           H L  +RF YH  + L SDP  T P+D
Sbjct: 357 HHLDMLRFFYHPCFKLPSDP--TYPSD 381


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -2

Query: 83  SVPFNVFTLLAFGFVNVFLG 24
           S P NV  +LAFGFVN F G
Sbjct: 175 STPHNV-KILAFGFVNSFSG 193


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 510 LTHYYTRVIILLNRKFDFTFDARIWDEISAWEHVHV 403
           L H Y +++IL   K    +  RIWD I     +H+
Sbjct: 229 LLHMYNKLLILSEIKEKSHWRERIWDLIQGMVTLHI 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,115,171
Number of Sequences: 5004
Number of extensions: 65418
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)