Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30889
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL022288-9|CAK55188.1|  452|Caenorhabditis elegans Hypothetical ...    31   1.2  
AL022288-8|CAA18367.2|  402|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AL110477-3|CAB54326.1|  314|Caenorhabditis elegans Hypothetical ...    28   8.3  
AF003383-1|AAB54234.1|  379|Caenorhabditis elegans Hypothetical ...    28   8.3  

>AL022288-9|CAK55188.1|  452|Caenorhabditis elegans Hypothetical
           protein ZK1025.4b protein.
          Length = 452

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
 Frame = -1

Query: 675 CLFISLYNKYGNI*NLCKTKNNANRSVQKRFIHKIISFFRH-------FT*QPILRLNNF 517
           CL+ +++  Y    N    KN  N S    F HK+   +R        F+  P ++ +N+
Sbjct: 11  CLYFTIFYVYPRFQNQSLLKNQINASFPITFYHKVYVDYRTSPPRLRIFSLNPCIKASNY 70

Query: 516 TILTHYYTRVIILL 475
            ++  YY   I  L
Sbjct: 71  LLVHVYYNGTITKL 84


>AL022288-8|CAA18367.2|  402|Caenorhabditis elegans Hypothetical
           protein ZK1025.4a protein.
          Length = 402

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
 Frame = -1

Query: 675 CLFISLYNKYGNI*NLCKTKNNANRSVQKRFIHKIISFFRH-------FT*QPILRLNNF 517
           CL+ +++  Y    N    KN  N S    F HK+   +R        F+  P ++ +N+
Sbjct: 11  CLYFTIFYVYPRFQNQSLLKNQINASFPITFYHKVYVDYRTSPPRLRIFSLNPCIKASNY 70

Query: 516 TILTHYYTRVIILL 475
            ++  YY   I  L
Sbjct: 71  LLVHVYYNGTITKL 84


>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
           protein R08B4.1b protein.
          Length = 1160

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 615 NNANRSVQKRFIHKIISFFRHFT*QPILRLNNFTILTHYY 496
           NNA      +FI +    F H + + I+   NF I THY+
Sbjct: 77  NNAKLGNLAKFIQRRSQLFYHMSFETIVSRENFAISTHYH 116


>Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical
           protein R08B4.1a protein.
          Length = 1137

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 615 NNANRSVQKRFIHKIISFFRHFT*QPILRLNNFTILTHYY 496
           NNA      +FI +    F H + + I+   NF I THY+
Sbjct: 77  NNAKLGNLAKFIQRRSQLFYHMSFETIVSRENFAISTHYH 116


>AL110477-3|CAB54326.1|  314|Caenorhabditis elegans Hypothetical
           protein Y113G7B.4 protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -1

Query: 675 CLFISLYNKYGNI*NLCKTKNNANRSVQKRFIHKIISFFRHFT*QPILRLNNFTILT 505
           C +IS Y+   N       +N+  +S++K  ++ I+         P LRL+NF I++
Sbjct: 84  CSYIS-YSPNSNNPGCTVERNSQRKSIEKTQLNAILDDLAVIVKNPKLRLDNFVIVS 139


>AF003383-1|AAB54234.1|  379|Caenorhabditis elegans Hypothetical
           protein ZC250.2 protein.
          Length = 379

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
 Frame = +1

Query: 337 WGNTCLVARYI*DTFTDG*ETLNV----DVFPCGDLVPYACVECKIEFP 471
           W    + A+Y    F    E L +    D F CGD +    V+C I FP
Sbjct: 98  WSGFAIDAKYEFAQFLHKWENLRLHHHPDYFCCGDTIDSCIVKCSIPFP 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,793,197
Number of Sequences: 27780
Number of extensions: 355892
Number of successful extensions: 744
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)