Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30889
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49290.1 68418.m06100 leucine-rich repeat family protein cont...    32   0.36 
At1g74180.1 68414.m08591 leucine-rich repeat family protein cont...    29   3.4  
At3g56040.1 68416.m06226 expressed protein                             29   4.5  
At3g16555.1 68416.m02115 F-box family protein contains F-box dom...    28   7.8  

>At5g49290.1 68418.m06100 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 888

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -2

Query: 245 LSASNPDLETILNFNFQFSIFMVVKKTHSLHQIRFTYHSLWGLVSD 108
           L  +NP+LE +   N  F+IF +    H+L  + F+ +++ GL  D
Sbjct: 342 LLENNPELEVLQLKNNSFTIFQMPTSVHNLQVLDFSENNIGGLFPD 387


>At1g74180.1 68414.m08591 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 951

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -2

Query: 245 LSASNPDLETILNFNFQFSIFMVVKKTHSLHQIRFTYHSLWGLVSD 108
           L  +NP+L+ +   N  F+IF +    H L  + F+ + + G++ D
Sbjct: 377 LLENNPELKVLQLKNNSFTIFQIPTIVHKLQVLDFSANDITGVLPD 422


>At3g56040.1 68416.m06226 expressed protein
          Length = 883

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 6   IGVVTDSKENVHESKG**CEYIKWNGIGRERF 101
           + ++T + +N HE     CE +KW G G+  F
Sbjct: 368 VAIMTSAAKNNHEHVSSLCERLKWFGRGQSNF 399


>At3g16555.1 68416.m02115 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 349

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/69 (24%), Positives = 29/69 (42%)
 Frame = +3

Query: 552 NAERKILFYE*IVFVQIC*RYFLFYISFKCCRIYCISL*TDTCNFFCEFIFNMKNKVENL 731
           +   K+ F   +    +C    L+++SF   RI C     +    FC       +K + L
Sbjct: 166 DTSNKVWFISDVQRYSVCLNGNLYWLSFDDFRILCFDFSREIVKPFCLLPCRKFDKCDLL 225

Query: 732 FIKQFKGCR 758
            ++ FKG R
Sbjct: 226 ALQVFKGDR 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,362,529
Number of Sequences: 28952
Number of extensions: 307560
Number of successful extensions: 638
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)