Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30885
(525 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0) 30 1.0
SB_28910| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07) 28 4.1
SB_24669| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4) 28 5.4
SB_52932| Best HMM Match : Ank (HMM E-Value=0) 28 5.4
SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_19798| Best HMM Match : Calx-beta (HMM E-Value=6.3e-12) 27 7.2
SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22) 27 7.2
SB_56544| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0)
Length = 488
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +2
Query: 44 SEFDASPDGAYNYNFETSNGIVRSETGE 127
+E DA PDG+YN++ ++ +V +ETGE
Sbjct: 218 TEEDAKPDGSYNFDHKS---VVNTETGE 242
>SB_28910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 11 PPTEDYPKIVRSEFDASPDGAY 76
PPT+DY + RS+ D S DG Y
Sbjct: 17 PPTKDYDRRSRSQDDDSDDGCY 38
>SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07)
Length = 599
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 59 SPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVR-GSYSYTNTDGKPETITYF 235
SP G Y E + I R E +L +K H ++AVR G Y + D T+T+
Sbjct: 94 SPSGHYYKVCEPNFFIGRDENLDLTLKSRSVDKKHAVIAVRDGRYELYDMDSLNGTVTHS 153
Query: 236 A 238
A
Sbjct: 154 A 154
>SB_24669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 49 IRRQPRWSLQLQFRDFQRHRA*RNW*AEGGSRRRQ 153
+RR+ WS+Q++ + RH + W GG ++R+
Sbjct: 3 VRRKDAWSMQVRQVEHPRHSYVQMWRKFGGPKKRE 37
>SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 47 EFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVA 175
E D+ YNY+ NG+ S+ G+L DN HV+ A
Sbjct: 65 EPDSEQADGYNYDTSHHNGVATSQRGQLARLAMGDNN-HVLNA 106
>SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
Length = 756
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 133 GGSRRRQQASRYCCCA 180
GGSRRR S++CC A
Sbjct: 97 GGSRRRNSKSKFCCFA 112
>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
Length = 1266
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +2
Query: 95 SNGIVRSETGELKEALDDDNKPHVIVAVRGSYSYTNTDGKPETITYFADET 247
S + + TG K LDD KPHV+ ++ SY D E + ET
Sbjct: 204 SKTVTKMFTGFRKLTLDDLRKPHVVKDIQ-SYILNRLDDDSELRKHLTRET 253
>SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = +2
Query: 59 SPDGAYNYNFETSNGIVRS----ETGELKEALDDDNKPHVIVAVRGSYSY 196
SPDG + NFE NG + + + +A++ D++ V+V ++G Y++
Sbjct: 205 SPDGICSVNFEFYNGAMSTAQCRRLSSVLQAVERDDRVKVVV-LKGGYNF 253
>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -1
Query: 471 FVHDILKTQQIVKKNVQKNMAVSIKLITSNKRMWWMLRH 355
F ++L ++++ N+Q++ VS +L S K M +L H
Sbjct: 811 FQDELLMLDELIQGNIQRSQLVSEQLSDSRKTMVKVLEH 849
>SB_19798| Best HMM Match : Calx-beta (HMM E-Value=6.3e-12)
Length = 185
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -1
Query: 468 VHDILKTQQIVKKNVQKNMAVSIKLITSNKRMWWMLRHTILY 343
VH I Q++++ N +KN + + + WW LR+ + Y
Sbjct: 139 VHTIF--QRLLRPNQRKNSPKKLFSACHSTKRWWRLRNVLAY 178
>SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)
Length = 1123
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 177 CVEATVTRTLTANLKPLRTSLTRLDT 254
C T +T N KP +TSLTRL++
Sbjct: 348 CPVDTKAMNITVNYKPEKTSLTRLES 373
>SB_56544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 937
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Frame = +2
Query: 2 IAAPPTEDYPKIVRSEF---DASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHV 166
++A DY V E ASP N ET + E K +D N+PH+
Sbjct: 481 VSASSPLDYVAFVNREVLFPAASPINMVNITIETDGRVESHEVFRAKLTVDTANRPHI 538
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,718,286
Number of Sequences: 59808
Number of extensions: 273562
Number of successful extensions: 783
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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