Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30884
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 40 4e-04
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 37 0.003
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 35 0.014
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 32 0.098
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 31 0.17
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.17
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 30 0.39
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 30 0.39
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 0.52
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 29 0.69
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa... 29 0.69
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 28 1.2
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 28 1.2
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 28 1.6
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 27 2.1
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 27 2.8
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.7
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p... 27 3.7
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 26 4.8
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 26 4.8
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 26 6.4
SPAC11H11.03c |||SMR and DUF1771 domain protein|Schizosaccharomy... 26 6.4
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 6.4
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 8.5
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 25 8.5
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 39.9 bits (89), Expect = 4e-04
Identities = 20/86 (23%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Frame = -2
Query: 662 EERMDQLTNQLKEARFLAEDAD---GKSDEVSRKLAFVEDELEVAEDRVKSGDAKISELE 492
E ++++L + K+ R A++ D +++++SRK+ +E+ELE + ++ K+ + +
Sbjct: 54 ESQLEELEEETKQLRLKADNEDIQKTEAEQLSRKVELLEEELETNDKLLRETTEKMRQTD 113
Query: 491 EELKVVGNSLKSLEVSEEKANQRVEE 414
+ + ++SLE + Q++EE
Sbjct: 114 VKAEHFERRVQSLERERDDMEQKLEE 139
Score = 37.9 bits (84), Expect = 0.001
Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Frame = -2
Query: 659 ERMDQLTNQLKEARFLAEDADGKSDEVSRKLAFVEDELEVAEDRVKSGDAKISELEEE-- 486
E+++ + EA AE A+ K EV +L+ E E E + ++ ++++ ELEEE
Sbjct: 6 EKINAARAETDEAVARAEAAEAKLKEVELQLSLKEQEYESLSRKSEAAESQLEELEEETK 65
Query: 485 ---LKVVGNSLKSLEVSE-----EKANQRVEEFXXXXXXXXXXXKXXXXXXXXXEKTVKK 330
LK ++ E + E + +E + E+ V+
Sbjct: 66 QLRLKADNEDIQKTEAEQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQS 125
Query: 329 LQKEVDRLEDELGINKDRYKSLADEMDSTFAEL 231
L++E D +E +L D+Y + E+D L
Sbjct: 126 LERERDDMEQKLEEMTDKYTKVKAELDEVHQAL 158
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 37.1 bits (82), Expect = 0.003
Identities = 24/87 (27%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Frame = -2
Query: 662 EERMDQLTNQLKEARFLAEDADGKSDEVSRKLAFVED---ELEVAEDRVKSGDAKISELE 492
+ER++ LT + + A+D++GK VS++ A +E+ +L + E+ + + K++ E
Sbjct: 171 KERINDLTYDYETLKANADDSEGKQTLVSKREAALEEFQSKLLIRENEINKRELKMNGKE 230
Query: 491 EELKV----VGNSLKSLEVSEEKANQR 423
++LK + N L +E E+ N+R
Sbjct: 231 DDLKKREKDLENRLLKVEEHEKSLNER 257
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 34.7 bits (76), Expect = 0.014
Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Frame = -2
Query: 686 WRTGHSRDEERMDQLTNQLKEARFLAEDADGKSD---EVSRKL-AFVEDELEVAEDRVKS 519
WR + +E ++++T +L++ + + + +SD EV KL E E+E E ++
Sbjct: 530 WREDVDQLQEYVEEITQELQDTKEVLSKSSKESDDYEEVVGKLRTEAEREIEKFEKTIRE 589
Query: 518 GDAKISELEEELKVVGNSLKSLEVSEEKANQRVEEF 411
+ IS +EE++ + + + L E+ N + EF
Sbjct: 590 NEESISLFKEEVEKLTDEITQL---SERYNDKCHEF 622
Score = 31.9 bits (69), Expect = 0.098
Identities = 20/79 (25%), Positives = 41/79 (51%)
Frame = -2
Query: 662 EERMDQLTNQLKEARFLAEDADGKSDEVSRKLAFVEDELEVAEDRVKSGDAKISELEEEL 483
+E +++LT+++ + D + DE+ ++L +E+E A++ +K S L E+L
Sbjct: 598 KEEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKE---DSTSKTSNLLEQL 654
Query: 482 KVVGNSLKSLEVSEEKANQ 426
K+ + SL E+ Q
Sbjct: 655 KMTEAEVDSLRKENEENKQ 673
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 31.9 bits (69), Expect = 0.098
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = -2
Query: 680 TGHSRDEERMDQLTNQLKEARFLAEDAD-GKSDEVSRKLAFVEDELEVAEDRVKSGDAKI 504
T H ++ + +L+ + A + KS EVS L+ E+ ED + S D ++
Sbjct: 549 TMHRSQRDKQESTERELRLLQEKAASLERNKSSEVSNLLSRYNTEVAHLEDALHSKDREL 608
Query: 503 SELEEELKVVGNSLKSLEVSEEK 435
+ L ELK N + L +E+
Sbjct: 609 ANLGVELKSTENRYRQLLQEKEE 631
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 31.1 bits (67), Expect = 0.17
Identities = 19/92 (20%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Frame = -2
Query: 683 RTGHSRDEERMDQLTNQLKEARFLAEDADGKSDEVSRKLAFVEDELEVAEDRVKSGDA-- 510
+T + R R++QLTN+L+ + ++ + + K +E L + +++ + S +
Sbjct: 662 QTSYQRSLIRLEQLTNELESLKSISRNKEKKFEEAISSLQLEKSNIQLQLTSLTSERSLA 721
Query: 509 --KISELEEELKVVGNSLKSLEVSEEKANQRV 420
K+++LE+ L + S L+ S + +++
Sbjct: 722 LEKLNDLEKSLVLSERSKDELDESYKSLQEQL 753
Score = 29.9 bits (64), Expect = 0.39
Identities = 31/147 (21%), Positives = 63/147 (42%), Gaps = 2/147 (1%)
Frame = -2
Query: 668 RDEERMDQLTNQLKEARFLAEDADGKSD--EVSRKLAFVEDELEVAEDRVKSGDAKISEL 495
R E+ + N+L+ + A DADGK++ + +++ + + E +V++ A+++ L
Sbjct: 1495 RTEKELADSKNELEHLQSEAVDADGKTEISNLEKEIHELRSDKEGLVQQVQNLSAELAAL 1554
Query: 494 EEELKVVGNSLKSLEVSEEKANQRVEEFXXXXXXXXXXXKXXXXXXXXXEKTVKKLQKEV 315
E G SLE ++E A R + + + V + +K
Sbjct: 1555 REHSPTQG----SLENADEIARLRSQ---LESTKQYYEKEKETEILAARSELVAEKEKTK 1607
Query: 314 DRLEDELGINKDRYKSLADEMDSTFAE 234
+ LE++L R K L ++ +E
Sbjct: 1608 EELENQLNEKSQRIKELEEQAQKNSSE 1634
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 31.1 bits (67), Expect = 0.17
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = -2
Query: 662 EERMDQLTNQLKEARFLAEDADGKSDEVSRKLAFVEDELEVAEDRVKSGDAKISELEEEL 483
EER D L N+L + + D+D + L V DEL+ + S + SE+ ++
Sbjct: 1172 EERSD-LANRLSDMKKSLSDSDNVISVIRSDLVRVNDELDTLKKDKDSLSTQYSEVCQDR 1230
Query: 482 KVVGNSLKSLEVSEEK 435
+ +SLK E S K
Sbjct: 1231 DDLLDSLKGCEESFNK 1246
Score = 26.6 bits (56), Expect = 3.7
Identities = 19/88 (21%), Positives = 35/88 (39%)
Frame = -2
Query: 497 LEEELKVVGNSLKSLEVSEEKANQRVEEFXXXXXXXXXXXKXXXXXXXXXEKTVKKLQKE 318
LE+E + + LKSLE ++ + EE K K + Q+E
Sbjct: 897 LEQESAQLNSGLKSLEAEKQLLHTENEELHIRLDKLTGKLKIEESKSSDLGKKLTARQEE 956
Query: 317 VDRLEDELGINKDRYKSLADEMDSTFAE 234
+ L++E S+ ++D T ++
Sbjct: 957 ISNLKEENMSQSQAITSVKSKLDETLSK 984
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 29.9 bits (64), Expect = 0.39
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Frame = -2
Query: 581 VSRKLAFVEDEL-------EVAEDRVKSGDAKISELEEELKVVGNSLKSLEVSEEKANQR 423
+ R+L VEDEL V + R + + +IS+L + L+ N+++ L++ EK+ ++
Sbjct: 519 LQRRLRMVEDELHEAINSKNVQQSRSEELEQQISKLTDNLQEYRNTVRELKLDLEKSKKK 578
Query: 422 VEE 414
E+
Sbjct: 579 NED 581
Score = 27.5 bits (58), Expect = 2.1
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Frame = -2
Query: 662 EERMDQLTNQLKEAR-FLAEDADGKSD---EVSRKLAF---VEDELEVAED-RVKSGDAK 507
+E D +TNQ + A F AE + + E R A V +E++V D RV++ AK
Sbjct: 644 KEDADFITNQYQNASTFAAEQSKEVAKLQAECKRLQAINSKVMEEVKVYNDSRVEALLAK 703
Query: 506 ISELEEELKVV 474
+S LEE LK++
Sbjct: 704 VSSLEETLKIL 714
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 29.9 bits (64), Expect = 0.39
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = -3
Query: 724 QSADENNPYVQSVGEQGTAGTRSVWTSSPTN*KRPVFSPRTLTENPTRFRENWPSLKTNS 545
+ +E+N ++S G T+ +++ ++SP++ K+ +F P ++ F NW S +
Sbjct: 46 EKLNEHNSKLKSSGSF-TSNSQTDLSNSPSSKKKNIFYPIARAKHSFYFNHNWSSDLQQA 104
Query: 544 KSP 536
SP
Sbjct: 105 NSP 107
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 29.5 bits (63), Expect = 0.52
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -2
Query: 641 TNQLKEARFLAEDADG---KSDEVSRKLAFVEDELEVAEDRVKSGDAKISELEEELKVVG 471
+N L E L E+ +G K D ++++ + +ELE R+KS + +SEL +
Sbjct: 516 SNDLNEIHDLREENEGLTLKIDSITKEKDRLINELE---QRIKSYEVNVSELNGTIDEYR 572
Query: 470 NSLKSLE 450
N LK E
Sbjct: 573 NKLKDKE 579
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 29.1 bits (62), Expect = 0.69
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -2
Query: 581 VSRKLAFVEDELEVAEDRVKSGDAKISELEEELKVVGNSLKSLEVSEEKANQRV 420
VSR + + E+ E +K +SELE EL+ S L++ EK +++
Sbjct: 728 VSRSVEDKKKEIGHYESLIKEKQPHLSELEMELRNFVKSRDELQIQVEKVEEKI 781
>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 29.1 bits (62), Expect = 0.69
Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Frame = -2
Query: 536 EDRVKSGDAKISELEEELKVVGNSLKSLEV---SEEKANQR 423
E+R+K+ DA I EE+ K + ++++SLE+ EKAN++
Sbjct: 47 EERIKACDAGIQTSEEQKKELEHTMQSLEMIINVLEKANEK 87
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -3
Query: 235 SWLVTKLSHSTYRPHTYTNRTCTHTYAAPLPHTHKHMYINYTTTRIHVY 89
SW+ K S+ ++ RTCT + AP+ + YI R+HVY
Sbjct: 674 SWIGQKYSNVSFEKIDVAERTCTISLNAPILPDDGYAYI-----RLHVY 717
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/70 (22%), Positives = 32/70 (45%)
Frame = -2
Query: 659 ERMDQLTNQLKEARFLAEDADGKSDEVSRKLAFVEDELEVAEDRVKSGDAKISELEEELK 480
ER+ L NQ+ A E + + LA + E+ D + + K+S ++++ +
Sbjct: 902 ERLSSLENQVTIADEKYEFLYAEKQSIEEDLANKQTEISYLSDLSSTLEKKLSSIKKDEQ 961
Query: 479 VVGNSLKSLE 450
+ + K LE
Sbjct: 962 TISSKYKELE 971
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/62 (20%), Positives = 31/62 (50%)
Frame = -2
Query: 599 DGKSDEVSRKLAFVEDELEVAEDRVKSGDAKISELEEELKVVGNSLKSLEVSEEKANQRV 420
+ + + V R L E++L++ + + ++ + E+ N L+SLE + + R+
Sbjct: 844 ESELNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSEISDKRNELESLEELQHEVATRI 903
Query: 419 EE 414
E+
Sbjct: 904 EQ 905
Score = 25.8 bits (54), Expect = 6.4
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = -2
Query: 638 NQLKE-ARFLAEDADGKSDEVSRKLAF---VEDELEVAEDRVKSGDAKISELEEELKVVG 471
N KE + +L + D +E+ KL+ +E LE DR+ A I+ + E + +
Sbjct: 407 NSTKENSDYLKTEYDEMENELKAKLSRKKEIEISLESQGDRMSQLLANITSINERKENLT 466
Query: 470 NSLKSLEVSEEKANQRVE 417
+ KSL E K +E
Sbjct: 467 DKRKSLWREEAKLKSSIE 484
Score = 25.8 bits (54), Expect = 6.4
Identities = 18/84 (21%), Positives = 35/84 (41%)
Frame = -2
Query: 500 ELEEELKVVGNSLKSLEVSEEKANQRVEEFXXXXXXXXXXXKXXXXXXXXXEKTVKKLQK 321
E+E ELK + K +E+S E R+ + + + KL+
Sbjct: 422 EMENELKAKLSRKKEIEISLESQGDRMSQLLANITSINERKENLTDKRKSLWREEAKLKS 481
Query: 320 EVDRLEDELGINKDRYKSLADEMD 249
++ ++D+L ++ K+L MD
Sbjct: 482 SIENVKDDLSRSE---KALGTTMD 502
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = -2
Query: 644 LTNQLKEARFLAEDADGKSDEVSRKLAFVEDELEVAEDRVKSGDAKISELEEELK-VVGN 468
LT L+E+ E D K +++ + ++DE + + + I EL EEL+ +
Sbjct: 475 LTKLLEESAQGIEYTDQKLEKMGGWMKKLQDENSEKTETIAQLEQIIEELHEELRSLEEE 534
Query: 467 SLKSLEVSEEKANQ 426
S+K +++ NQ
Sbjct: 535 SIKESSATQQNENQ 548
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -2
Query: 557 EDELEVAEDRVKSGDAKISELEEELKVVGNSLKSLEVSEEKANQRV 420
E E E A K D+K S++EEE + ++ E+ EEK N+ +
Sbjct: 15 ETESESANGDTKQDDSKKSQVEEE----EDGIEESELGEEKDNKTI 56
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 26.6 bits (56), Expect = 3.7
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = -3
Query: 733 EAQQSADENNPYVQSVGEQGTAGTRSVWTSS----PTN*KRPVFSPRTLTENPTRFRENW 566
E +S +EN +QS+ E+ + RSV S P+N K PV R+ + R ++NW
Sbjct: 197 ERLKSIEEN---LQSLQERISHCERSVSLSPSFAPPSNVKSPVQQHRSFVSSSARAKKNW 253
Query: 565 PSLKTNSKSPK 533
+ S K
Sbjct: 254 GRQSNSPNSNK 264
>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 595 ENPTRFRENWPSLKTNSKSPKTVSSLVTLRSQSLKKN*RSSVTPLNLSK 449
EN R ++KT K +T SL+ +S++LKK R V + +K
Sbjct: 7 ENVFPTRMTLTTMKTRLKGAQTGHSLLKRKSEALKKRFREIVVNIEQAK 55
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 625 RPVFSPRTLTENPTRFRENWPSLKTNSKSPK 533
RP+F R L E P R + S+ +SPK
Sbjct: 32 RPIFEKRLLAETPFSIRPSNASVLIAKRSPK 62
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/79 (22%), Positives = 37/79 (46%)
Frame = -2
Query: 647 QLTNQLKEARFLAEDADGKSDEVSRKLAFVEDELEVAEDRVKSGDAKISELEEELKVVGN 468
+L + +EA ++ + + D K +E+ E + ++K+ + + LEE K +
Sbjct: 166 ELAKKFEEASQISNKLEKEKDATGSKS--IEELWEEHQKQLKNAGLEPASLEEYQKQWED 223
Query: 467 SLKSLEVSEEKANQRVEEF 411
LKS +S++ V F
Sbjct: 224 FLKSNNISDDPYTSSVNSF 242
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 6.4
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = -2
Query: 599 DGKSDEVSRKLAFVEDELEVAEDRVKSGDAKISELEEELKVVGNSLKSLEVSEEKANQRV 420
+ K + +S K A E E ++ K K EEE V + E E+K N V
Sbjct: 7 NNKDESISTKNALEEKSNETKDETSKR---KHDPAEEE-SAVSTKVSKSEPLEDKGNAEV 62
Query: 419 EEF 411
+EF
Sbjct: 63 KEF 65
>SPAC11H11.03c |||SMR and DUF1771 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 206
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/47 (19%), Positives = 25/47 (53%)
Frame = -2
Query: 659 ERMDQLTNQLKEARFLAEDADGKSDEVSRKLAFVEDELEVAEDRVKS 519
ERM+ Q A +L +++ DE+ ++++ ++ + R+++
Sbjct: 49 ERMENYNRQAASAIYLYKNSQCNPDEIDLHGLYIDEAVQAVQQRIEN 95
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/58 (22%), Positives = 32/58 (55%)
Frame = -2
Query: 587 DEVSRKLAFVEDELEVAEDRVKSGDAKISELEEELKVVGNSLKSLEVSEEKANQRVEE 414
D+ + + F E + E A + + ++ +LEE+++ L++++ S + QR+E+
Sbjct: 585 DQQTTEAPFEEPD-EPAHEPTEEEQEEMRKLEEKIESTKYGLETIQTSGKTIKQRIEQ 641
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = -2
Query: 686 WRTGHSRDEERMDQLTNQLKEARFLAEDADGKSDEVSRKLAFVEDELEVAEDRVK 522
WR +++++L Q+ AR +AED E+ K+ +E +AE +V+
Sbjct: 1272 WRDTFYDCIQKIEELEKQIDVARDVAEDTKSLGKELQNKI----NEKNLAEQKVE 1322
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 8.5
Identities = 20/70 (28%), Positives = 38/70 (54%)
Frame = -2
Query: 647 QLTNQLKEARFLAEDADGKSDEVSRKLAFVEDELEVAEDRVKSGDAKISELEEELKVVGN 468
Q+T L++ + L + + + D + + + ++ L AED KS + S+ +E+LK
Sbjct: 307 QMTETLEKYKSLDFNMEKEGDVIQQLKSSIKKPLSGAEDEQKS-RSMFSKNDEKLK---- 361
Query: 467 SLKSLEVSEE 438
KSLE+ E+
Sbjct: 362 --KSLELMED 369
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,440
Number of Sequences: 5004
Number of extensions: 39341
Number of successful extensions: 231
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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