Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30884
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.9  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.1  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 665 PCCALFSNTLHIRVVLVSRLL 727
           PC  LF N L I  V+  R L
Sbjct: 197 PCLTLFGNVLVILAVVRERAL 217


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +1

Query: 382 LPVRVFSCFLNSSTRWLAFS--SDT 450
           LPV +     + STRW+AF+  SDT
Sbjct: 106 LPVAISFFNDDLSTRWIAFNCLSDT 130


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +1

Query: 382 LPVRVFSCFLNSSTRWLAFS--SDT 450
           LPV +     + STRW+AF+  SDT
Sbjct: 106 LPVAISFFNDDLSTRWIAFNCLSDT 130


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +1

Query: 382 LPVRVFSCFLNSSTRWLAFS--SDT 450
           LPV +     + STRW+AF+  SDT
Sbjct: 106 LPVAISFFNDDLSTRWIAFNCLSDT 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,674
Number of Sequences: 438
Number of extensions: 2894
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)