Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30881
(754 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal hydrolase-r... 30 1.4
At3g54990.1 68416.m06102 AP2 domain-containing transcription fac... 30 1.9
At5g02590.1 68418.m00194 chloroplast lumen common family protein... 29 2.5
At3g07740.2 68416.m00935 transcriptional adaptor (ADA2a) identic... 29 3.3
At3g07740.1 68416.m00936 transcriptional adaptor (ADA2a) identic... 29 3.3
At5g23910.1 68418.m02808 kinesin motor protein-related 29 4.4
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica... 29 4.4
At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-r... 29 4.4
At5g55540.1 68418.m06919 expressed protein 28 5.8
At4g14140.1 68417.m02181 DNA (cytosine-5-)-methyltransferase (ME... 28 5.8
At1g67170.1 68414.m07641 expressed protein similar to enterophil... 28 5.8
At1g07250.1 68414.m00771 UDP-glucoronosyl/UDP-glucosyl transfera... 28 5.8
At5g23440.1 68418.m02750 ferredoxin-thioredoxin reductase, putat... 28 7.7
At4g01090.1 68417.m00147 extra-large G-protein-related contains ... 28 7.7
>At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1132
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 544 SVARWVQPVDGSQPVEMVLPCLVGVEGINSTSHASWHVVDWPVIIERAR 398
S+ W +PVD VEM+ L V+ S S W +WP+ ++ R
Sbjct: 293 SLGGW-EPVDAVAAVEMIKNQLADVKAFASKSKNGWS-YEWPLAVDEER 339
>At3g54990.1 68416.m06102 AP2 domain-containing transcription
factor, putative similar to (SP:P47927) Floral homeotic
protein APETALA2, Arabidopsis thaliana, U12546
Length = 247
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 52 YDRYLTEYEH-DIDRQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSRGK 216
YDR ++ D D V + +RHD K + + + + LR S FGR S+ K
Sbjct: 161 YDRAAIKFRGLDADINFVVDDYRHDIDKMKNLNKVEFVQTLRRESASFGRGSSKYK 216
>At5g02590.1 68418.m00194 chloroplast lumen common family protein
various predicted proteins, Arabidopsis thaliana
Length = 326
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 662 GNRERGRRGFSDVFKKDPFFAEAENGQVL 748
G+ + +GF +V KDPF EA +G V+
Sbjct: 177 GDFDSATKGFEEVLSKDPFRVEAYHGLVM 205
>At3g07740.2 68416.m00935 transcriptional adaptor (ADA2a) identical
to transcriptional adaptor ADA2a [Arabidopsis thaliana]
gi|13591698|gb|AAK31319
Length = 477
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +1
Query: 46 FNYDRYLTEYEHDIDRQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSR 210
+N R E EHD D + + DA E Q L VLR +SKR + R
Sbjct: 204 YNLKREEFEIEHDNDAEQLLADMEFKDSDTDA-EREQKLQVLRIYSKRLDERKRR 257
>At3g07740.1 68416.m00936 transcriptional adaptor (ADA2a) identical
to transcriptional adaptor ADA2a [Arabidopsis thaliana]
gi|13591698|gb|AAK31319
Length = 548
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +1
Query: 46 FNYDRYLTEYEHDIDRQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSR 210
+N R E EHD D + + DA E Q L VLR +SKR + R
Sbjct: 275 YNLKREEFEIEHDNDAEQLLADMEFKDSDTDA-EREQKLQVLRIYSKRLDERKRR 328
>At5g23910.1 68418.m02808 kinesin motor protein-related
Length = 665
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 276 SRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLAL 407
S+ T L L+G +TCL++ R T R + T T A+
Sbjct: 261 SKLTRMLKDCLKGSNITLLITCLTVLRGNVTERKTKINTATSAI 304
>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 2055
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 572 ITDLTAPLIDPLKPKSLKGIEYEPDNK 652
+TDL +PL+ P++P ++ Y PD +
Sbjct: 1042 VTDLLSPLLSPIRPAIVRRQVYFPDRR 1068
>At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1136
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -1
Query: 544 SVARWVQPVDGSQPVEMVLPCLVGVEGINSTSHASWHVVDWPVIIERAR 398
S+ W +PVD + VEM+ L V+ S W +WP+ + R
Sbjct: 290 SIGSW-EPVDAAAAVEMIKNQLADVKAFASKCKNGWS-KEWPLAADEER 336
>At5g55540.1 68418.m06919 expressed protein
Length = 1380
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -2
Query: 249 SGKTLRRVGLYLSSALMSSEPFRE----RTKDCQNLA 151
SGKT+ R G L+ L+S + FRE R D NLA
Sbjct: 1057 SGKTVLRAGFDLARNLLSDDDFREVLQRRYHDLHNLA 1093
>At4g14140.1 68417.m02181 DNA (cytosine-5-)-methyltransferase (METII)
nearly identical to cytosine-5 methyltransferase (METII)
[Arabidopsis thaliana] GI:6523846
Length = 1519
Score = 28.3 bits (60), Expect = 5.8
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Frame = -1
Query: 610 LKGVDEGCGKVGDGVGPVL*VESVARWVQPVDGSQP----VEMVL---PCLVGVEGINST 452
L+ + E CG V D V V E A+ + + P V+ + PC G G+N
Sbjct: 1134 LRAIMEKCGDVDDCVSTVEAAELAAKLDENQKSTLPLPGQVDFINGGPPCQ-GFSGMNRF 1192
Query: 451 SHASWHVVDWPVII 410
SH SW V +I+
Sbjct: 1193 SHGSWSKVQCEMIL 1206
>At1g67170.1 68414.m07641 expressed protein similar to
enterophilin-2L (GI:12718845) [Cavia porcellus]; similar
to Hyaluronan mediated motility receptor (Intracellular
hyaluronic acid binding protein) (Receptor for
hyaluronan-mediated motility) (CD168 antigen)
(Swiss-Prot:O75330) [Homo sapiens]
Length = 359
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = +2
Query: 119 MIGRNETPSKKARFWQSFVRSLKGSEDIRAEERYRPTRRSVFPELLSTYPYSKSIYDDPI 298
++ R E SK + Q +S + I A R + + +TY Y K Y+D +
Sbjct: 150 VVAREELMSKVHQLTQELQKSRSDVQQIPALMSELENLRQEYQQCRATYDYEKKFYNDHL 209
Query: 299 AAAERITVPGYRYLPVHREI 358
E + Y+ + RE+
Sbjct: 210 ---ESLQAMEKNYMTMAREV 226
>At1g07250.1 68414.m00771 UDP-glucoronosyl/UDP-glucosyl transferase
family protein similar to UDP-glucose
glucosyltransferase GI:453245 from [Manihot esculenta]
Length = 479
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -1
Query: 466 GINSTSHASWH---VVDWPVIIERARVVVGIDRARGVAVDLAMD 344
G NST + W V WP+ E+ + + G+AVDL MD
Sbjct: 369 GWNSTLESLWFGVPVATWPMYAEQQLNAFTLVKELGLAVDLRMD 412
>At5g23440.1 68418.m02750 ferredoxin-thioredoxin reductase, putative
similar to ferredoxin-thioredoxin reductase, variable
chain (FTR-V, Ferredoxin- thioredoxin reductase subunit
A, FTR-A) [Zea mays] SWISS-PROT:P80680
Length = 182
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 315 LRYPATVTCLSIARSTATPRALSMPTTTLA-LSIITGQS 428
+R P++ CLS + +TAT +++ + +A LS+ T QS
Sbjct: 15 IRRPSSHDCLSASATTATATPMALKSCIVAPLSLFTSQS 53
>At4g01090.1 68417.m00147 extra-large G-protein-related contains
weak similarity to extra-large G-protein [Arabidopsis
thaliana] gi|3201682|gb|AAC19353
Length = 714
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 341 PVHREIYG-YSPRPIYAHNYPRSLDYYRPIY 430
PVH + ++P P Y H YP + Y P++
Sbjct: 116 PVHLHGHANHNPGPSYYHQYPEPIQYPGPVH 146
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,755,689
Number of Sequences: 28952
Number of extensions: 366833
Number of successful extensions: 1149
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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