Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30880
(370 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 219 8e-59
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 124 4e-30
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 99 1e-22
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 73 2e-14
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 63 1e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 63 2e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 54 9e-09
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.057
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 28 0.53
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 25 2.8
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 3.7
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 3.7
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 4.9
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 25 4.9
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 24 6.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 6.5
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 21 8.4
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 24 8.6
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 24 8.6
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 24 8.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 219 bits (536), Expect = 8e-59
Identities = 95/105 (90%), Positives = 102/105 (97%)
Frame = +1
Query: 55 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 234
++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 235 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLT 369
RGILTLKYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLT
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLT 106
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 124 bits (299), Expect = 4e-30
Identities = 56/104 (53%), Positives = 74/104 (71%), Gaps = 1/104 (0%)
Frame = +1
Query: 61 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 240
D + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRG 67
Query: 241 ILTLKYPIEHGIITNWDDMEKIWHHTFYN-ELRVAPEEHPVLLT 369
+L ++ PIE GII NW DME+IW + + + +L PEEHP+LLT
Sbjct: 68 LLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLT 111
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 99 bits (238), Expect = 1e-22
Identities = 46/103 (44%), Positives = 71/103 (68%), Gaps = 2/103 (1%)
Frame = +1
Query: 67 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 240
A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63
Query: 241 ILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLT 369
+L +KYP+E+GII ++++M ++W +TF+ +L++ P +LLT
Sbjct: 64 LLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLT 106
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 72.5 bits (170), Expect = 2e-14
Identities = 44/123 (35%), Positives = 62/123 (50%), Gaps = 24/123 (19%)
Frame = +1
Query: 73 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 201
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 202 ------DSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPV 360
D ++G++A K +L YPI HG I NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 361 LLT 369
LLT
Sbjct: 127 LLT 129
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 63.3 bits (147), Expect = 1e-11
Identities = 34/104 (32%), Positives = 56/104 (53%)
Frame = +1
Query: 58 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 237
D+V+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 238 GILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLT 369
G + +K I +G + NWD +W + +L+ P EHP+L+T
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILIT 104
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 62.9 bits (146), Expect = 2e-11
Identities = 38/123 (30%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Frame = +1
Query: 4 ESIPASPTQTHTKFKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM 183
E + + PT + F+ +D+ LV+DNGS +AG+ G+ P+ VF ++V R R +
Sbjct: 8 EPVFSGPTPS---FQNVSNDIP-LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR--- 60
Query: 184 VGMGQKDSYVGDEAQSKRGILTL-KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPV 360
+ + + VG++ + G ++ + P E +I+NWD ME++ +TF +L + EHP+
Sbjct: 61 -KLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPI 118
Query: 361 LLT 369
+T
Sbjct: 119 CMT 121
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 53.6 bits (123), Expect = 9e-09
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Frame = +1
Query: 58 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 237
+++ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 238 GI--LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLT 369
I + +K +GII +W+ W +L+V P E+ +++T
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMIT 107
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.057
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 118 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 261
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 27.9 bits (59), Expect = 0.53
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Frame = +1
Query: 73 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 252
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 253 KYPIEH--GIITNWDDMEKIWHHTFYNELRVAPE--EHPVLLT 369
++ H G + +W +W N + P ++ +LLT
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLT 100
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.4 bits (53), Expect = 2.8
Identities = 6/21 (28%), Positives = 13/21 (61%)
Frame = +1
Query: 259 PIEHGIITNWDDMEKIWHHTF 321
PI+ G + +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 3.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 314 WCQIFS-MSSQLVMIPCSMGYFRVRIPLLL-WASSPT*ESFWPIPTITPWW 168
WC+ S + SQ+ + +G F PL L WA + + P ITPWW
Sbjct: 304 WCKPSSAVLSQIFGVKTGLGLF----PLTLDWAQISSLSN----PLITPWW 346
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 3.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 178 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 264
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 4.9
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +1
Query: 85 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 237
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 24.6 bits (51), Expect = 4.9
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -2
Query: 282 GDDTVLDGVLQSEDTSLALGLVTHVGVFLAHTDHH 178
GDD+VLD V +D L L AH D H
Sbjct: 676 GDDSVLDTVTAGKDVYAFLNLFFAKFPQYAHLDFH 710
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 24.2 bits (50), Expect = 6.5
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +1
Query: 256 YPIEHGIITNWDDMEKIWHHTFYNELRVAPE 348
YP G++ +W ++E + E+R+ P+
Sbjct: 244 YPRTDGLLFSWSELESMNSENMKPEIRLIPK 274
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 6.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 161 RPTMDGKTARGASSPAKPALHMPEPL 84
RP+ DG+ A G A P++ P P+
Sbjct: 950 RPSNDGRKASGPRPAAPPSIPPPLPV 975
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 21.4 bits (43), Expect(2) = 8.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 241 ILTLKYPIEHGIITN 285
I+T YP HGI++N
Sbjct: 125 IVTGLYPESHGIVSN 139
Score = 20.6 bits (41), Expect(2) = 8.4
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 280 TNWDDMEKIWHHTFYNELRVAPEEHP 357
T WD E IW + N +R A P
Sbjct: 162 TWWDKGEPIWVNAERNNVRSAVHMWP 187
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 23.8 bits (49), Expect = 8.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 315 VVPDLLHVIPVGDDTVLDGVLQSED 241
VV DL +PV D+ LD + +ED
Sbjct: 192 VVADLPFPLPVSDEEQLDWIRANED 216
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 23.8 bits (49), Expect = 8.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 132 GRVVAGETGLAHAGAIVDYKRSNIVVA 52
G+V+ G++ A A DYK+ ++A
Sbjct: 4 GKVIEGQSVAEWASAYFDYKKGKKIIA 30
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 23.8 bits (49), Expect = 8.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 80 STMAPACARPVSPATTRPAPSS 145
S AP+ P +P+T +P PS+
Sbjct: 107 SITAPSKTEPSTPSTEKPEPST 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,609,308
Number of Sequences: 5004
Number of extensions: 32156
Number of successful extensions: 116
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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