Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30880
(370 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 237 2e-63
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 235 5e-63
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 235 5e-63
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 235 5e-63
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 235 5e-63
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 235 5e-63
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 235 5e-63
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 235 5e-63
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 226 4e-60
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 196 3e-51
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 188 1e-48
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 186 3e-48
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 186 3e-48
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 182 5e-47
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 142 7e-35
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 125 9e-30
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 94 3e-20
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 79 1e-15
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 47 5e-06
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 47 5e-06
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 47 5e-06
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 31 0.19
AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical ... 30 0.59
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 0.79
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 28 2.4
AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical ... 28 2.4
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 27 3.2
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 27 3.2
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 27 3.2
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 27 3.2
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 27 3.2
Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr... 27 4.2
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr... 27 4.2
Z78543-3|CAB01755.2| 772|Caenorhabditis elegans Hypothetical pr... 27 4.2
Z81551-1|CAB04483.2| 335|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical p... 27 5.5
Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical pr... 26 7.3
Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical p... 26 7.3
AF125960-3|AAD14737.1| 446|Caenorhabditis elegans Hypothetical ... 26 7.3
AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trn... 26 9.7
AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trn... 26 9.7
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 26 9.7
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 237 bits (580), Expect = 2e-63
Identities = 106/107 (99%), Positives = 107/107 (100%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 228
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 229 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLT 369
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLT
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 107
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 235 bits (576), Expect = 5e-63
Identities = 105/107 (98%), Positives = 107/107 (100%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 228
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 229 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLT 369
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLT
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 107
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 235 bits (576), Expect = 5e-63
Identities = 105/107 (98%), Positives = 107/107 (100%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 228
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 229 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLT 369
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLT
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 107
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 235 bits (576), Expect = 5e-63
Identities = 105/107 (98%), Positives = 107/107 (100%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 228
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 229 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLT 369
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLT
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 107
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 235 bits (576), Expect = 5e-63
Identities = 105/107 (98%), Positives = 107/107 (100%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 228
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 229 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLT 369
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLT
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 107
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 235 bits (576), Expect = 5e-63
Identities = 104/107 (97%), Positives = 107/107 (100%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 228
MCDDDVAAL++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 229 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLT 369
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLT
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 107
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 235 bits (576), Expect = 5e-63
Identities = 105/107 (98%), Positives = 107/107 (100%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 228
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 229 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLT 369
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLT
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 107
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 235 bits (576), Expect = 5e-63
Identities = 105/107 (98%), Positives = 107/107 (100%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 228
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 229 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLT 369
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLT
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 107
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 226 bits (552), Expect = 4e-60
Identities = 99/105 (94%), Positives = 105/105 (100%)
Frame = +1
Query: 55 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 234
++++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 235 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLT 369
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELR+APEEHPVLLT
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRIAPEEHPVLLT 106
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 196 bits (479), Expect = 3e-51
Identities = 87/89 (97%), Positives = 89/89 (100%)
Frame = +1
Query: 103 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIIT 282
+AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+T
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 64
Query: 283 NWDDMEKIWHHTFYNELRVAPEEHPVLLT 369
NWDDMEKIWHHTFYNELRVAPEEHPVLLT
Sbjct: 65 NWDDMEKIWHHTFYNELRVAPEEHPVLLT 93
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 188 bits (458), Expect = 1e-48
Identities = 85/86 (98%), Positives = 86/86 (100%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 228
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 229 SKRGILTLKYPIEHGIITNWDDMEKI 306
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 186 bits (454), Expect = 3e-48
Identities = 84/86 (97%), Positives = 86/86 (100%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 228
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 229 SKRGILTLKYPIEHGIITNWDDMEKI 306
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 186 bits (454), Expect = 3e-48
Identities = 84/86 (97%), Positives = 86/86 (100%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 228
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 229 SKRGILTLKYPIEHGIITNWDDMEKI 306
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 182 bits (444), Expect = 5e-47
Identities = 82/83 (98%), Positives = 83/83 (100%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 228
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 229 SKRGILTLKYPIEHGIITNWDDM 297
SKRGILTLKYPIEHGI+TNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 142 bits (344), Expect = 7e-35
Identities = 62/63 (98%), Positives = 63/63 (100%)
Frame = +1
Query: 181 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPV 360
MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 60
Query: 361 LLT 369
LLT
Sbjct: 61 LLT 63
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 125 bits (302), Expect = 9e-30
Identities = 56/109 (51%), Positives = 79/109 (72%), Gaps = 4/109 (3%)
Frame = +1
Query: 55 DDDVAA---LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 225
D DV A +V+DNGSG+ KAGFAG+ P+ F + VGRP++ VM G D ++G +A
Sbjct: 2 DYDVIANQPVVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKA 61
Query: 226 QSKRGILTLKYPIEHGIITNWDDMEKIWHHTF-YNELRVAPEEHPVLLT 369
+S RG+ +++YP+EHGI+ NW DMEKIW + F ++L++ PEEHPVLLT
Sbjct: 62 ESNRGLFSIEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLT 110
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 93.9 bits (223), Expect = 3e-20
Identities = 47/102 (46%), Positives = 66/102 (64%), Gaps = 3/102 (2%)
Frame = +1
Query: 73 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM-VGMGQ-KDSYVGDEAQSKRGIL 246
+VVDNG+G K G+AG + P +FPS+VGRP + VG + KD VG+E R +L
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQML 68
Query: 247 TLKYPIEHGIITNWDDMEKIWHHTFYNE-LRVAPEEHPVLLT 369
+ YP+++GI+ NWDDM +W HTF E L + P+E +LLT
Sbjct: 69 DINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLT 110
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 78.6 bits (185), Expect = 1e-15
Identities = 45/120 (37%), Positives = 61/120 (50%), Gaps = 13/120 (10%)
Frame = +1
Query: 49 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI------VGRPRHQG------VMVGM 192
M + A V+DNG+G K G+AG+ P+ + PS V Q V G+
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGI 60
Query: 193 GQKDSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLT 369
D ++GDEA S T+KYPI HGI+ +WD ME+ W + LR PE+H LLT
Sbjct: 61 DDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLT 120
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 46.8 bits (106), Expect = 5e-06
Identities = 26/86 (30%), Positives = 43/86 (50%)
Frame = +1
Query: 64 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 243
+ ++ DNG K G ++PR V SIV + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 244 LTLKYPIEHGIITNWDDMEKIWHHTF 321
++ PIE G + NWD ++IW TF
Sbjct: 58 FYVR-PIERGYVVNWDTQQQIWEKTF 82
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 46.8 bits (106), Expect = 5e-06
Identities = 26/86 (30%), Positives = 43/86 (50%)
Frame = +1
Query: 64 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 243
+ ++ DNG K G ++PR V SIV + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 244 LTLKYPIEHGIITNWDDMEKIWHHTF 321
++ PIE G + NWD ++IW TF
Sbjct: 58 FYVR-PIERGYVVNWDTQQQIWEKTF 82
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 46.8 bits (106), Expect = 5e-06
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Frame = +1
Query: 58 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA--QS 231
D+V+ LV D GS + GFAG++ P+ PS + Q+ GD + Q+
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYIAVQEALPDDTIEKQEAMEEGDNSKVQT 68
Query: 232 KR------GILTLKYP---------IEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLL 366
KR G + P ++ G+I +W+ EKI H++ N L P EHPVL
Sbjct: 69 KREKNFFIGTTKIIVPRARTNMESFMKEGLIEDWELFEKIVEHSYENILYSNPSEHPVLF 128
Query: 367 T 369
+
Sbjct: 129 S 129
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 31.5 bits (68), Expect = 0.19
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 80 STMAPACARPVSPATTRPAPSSRP 151
+T AP PATTRPAP+S+P
Sbjct: 317 ATRAPPATTRAPPATTRPAPASQP 340
>AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical
protein T08D2.8 protein.
Length = 388
Score = 29.9 bits (64), Expect = 0.59
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = +2
Query: 71 RL*STMAPACARPVSPATTRPAPSSRPSWVALATRA 178
RL S +AP A P S A TR APS + VA RA
Sbjct: 231 RLSSAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRA 266
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 29.5 bits (63), Expect = 0.79
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 194 PIPTITPWWRGRPTMDGKTARGASSPAKPALHMPEPL 84
P T TP RGRP + ++ P P P+PL
Sbjct: 336 PPATQTPRSRGRPRIHSSASKKTEKPETPRAESPDPL 372
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 103 KAGFAGDDAPRAVFPSIVGRPRHQG 177
KA + G D P+A F I+G ++G
Sbjct: 44 KASYLGHDTPQATFREIIGNKEYRG 68
>AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical
protein F54A3.1 protein.
Length = 425
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +2
Query: 80 STMAPACARPVSPATTRPAPSSRPSWVALATRA 178
S +AP A P S A TR APS + VA RA
Sbjct: 238 SAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRA 270
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 244 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 161
GY GP P + GP P PG EG
Sbjct: 387 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 414
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 244 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 161
GY GP P + GP P PG EG
Sbjct: 386 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 413
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 244 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 161
GY GP P + GP P PG EG
Sbjct: 386 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 413
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 244 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 161
GY GP P + GP P PG EG
Sbjct: 387 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 414
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 244 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 161
GY GP P + GP P PG EG
Sbjct: 423 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 450
>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical
protein F29G6.3c protein.
Length = 1453
Score = 27.1 bits (57), Expect = 4.2
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -2
Query: 348 LGGDTQLIVEGVVPDLLHVIPVGDDTVLDGVLQSEDTSLALGLV--THVGVFLAHTDH 181
L G Q +V +VP +H+ +D++ L S+A+G V +H GV + H H
Sbjct: 215 LHGRDQSVVSSIVPASVHIQSDSEDSIAPSKLTH---SIAVGGVVDSHNGVNVLHRSH 269
>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical
protein F29G6.3b protein.
Length = 1785
Score = 27.1 bits (57), Expect = 4.2
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -2
Query: 348 LGGDTQLIVEGVVPDLLHVIPVGDDTVLDGVLQSEDTSLALGLV--THVGVFLAHTDH 181
L G Q +V +VP +H+ +D++ L S+A+G V +H GV + H H
Sbjct: 215 LHGRDQSVVSSIVPASVHIQSDSEDSIAPSKLTH---SIAVGGVVDSHNGVNVLHRSH 269
>Z78543-3|CAB01755.2| 772|Caenorhabditis elegans Hypothetical
protein F29G6.3a protein.
Length = 772
Score = 27.1 bits (57), Expect = 4.2
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -2
Query: 348 LGGDTQLIVEGVVPDLLHVIPVGDDTVLDGVLQSEDTSLALGLV--THVGVFLAHTDH 181
L G Q +V +VP +H+ +D++ L S+A+G V +H GV + H H
Sbjct: 215 LHGRDQSVVSSIVPASVHIQSDSEDSIAPSKLTH---SIAVGGVVDSHNGVNVLHRSH 269
>Z81551-1|CAB04483.2| 335|Caenorhabditis elegans Hypothetical
protein F56A12.1 protein.
Length = 335
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +1
Query: 283 NWDDMEKIWHHTFYNE--LRVAPEEHPV 360
+++D++ IWHH Y E L+ E +PV
Sbjct: 172 HYNDLQDIWHHARYKESQLKRGKELNPV 199
>Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical
protein D2030.9b protein.
Length = 530
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 256 YPIEHGIITN-WDDMEKIWHHTFYNELRVAPEEHP 357
+P E+ I+++ WD + +W E +AP +HP
Sbjct: 452 HPTENEIVSSAWDGVTTVWTWDERQEGVIAPYDHP 486
>Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical
protein D2030.9a protein.
Length = 571
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 256 YPIEHGIITN-WDDMEKIWHHTFYNELRVAPEEHP 357
+P E+ I+++ WD + +W E +AP +HP
Sbjct: 493 HPTENEIVSSAWDGVTTVWTWDERQEGVIAPYDHP 527
>Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 26.2 bits (55), Expect = 7.3
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 157 GRPRHQGVMVGMGQKDSYVGD----EAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTF 321
G PRH+ + G+ ++++V + EA + + K HG +WD++ K + TF
Sbjct: 629 GIPRHE-ISHGVSDEEAFVREASIIEAVKLKNLRNKKAGEFHGTTKSWDNITKSEYGTF 686
>Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 26.2 bits (55), Expect = 7.3
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 157 GRPRHQGVMVGMGQKDSYVGD----EAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTF 321
G PRH+ + G+ ++++V + EA + + K HG +WD++ K + TF
Sbjct: 629 GIPRHE-ISHGVSDEEAFVREASIIEAVKLKNLRNKKAGEFHGTTKSWDNITKSEYGTF 686
>AF125960-3|AAD14737.1| 446|Caenorhabditis elegans Hypothetical
protein T12B3.1 protein.
Length = 446
Score = 26.2 bits (55), Expect = 7.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 274 IITNWDDMEKIWHHTFYNELRVAPE 348
++ NWD EK W TF+ L+ E
Sbjct: 382 VLQNWDQTEKDWSPTFWFLLKCIRE 406
>AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform a protein.
Length = 909
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 230 LWASSPT*ESFWPIPTITPWWRGRP 156
LW SS E FWP + W GRP
Sbjct: 484 LWKSSKDGEPFWP----SEWGNGRP 504
>AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform b protein.
Length = 908
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 230 LWASSPT*ESFWPIPTITPWWRGRP 156
LW SS E FWP + W GRP
Sbjct: 483 LWKSSKDGEPFWP----SEWGNGRP 503
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 25.8 bits (54), Expect = 9.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 162 PSPPGRDGRYGPE 200
P PPG+DG GP+
Sbjct: 267 PGPPGKDGEAGPD 279
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,291,554
Number of Sequences: 27780
Number of extensions: 201470
Number of successful extensions: 1043
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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