Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30880
         (370 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   1.5  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   3.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   4.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   8.1  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              20   8.1  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              20   8.1  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              20   8.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   8.1  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 339 DTQLIVEGVVPDLLHVI 289
           + Q +V+ V PD+LH+I
Sbjct: 21  NNQTVVDKVPPDMLHLI 37


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 94  GMCKAGFAGD 123
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 320 STMSCVSPPRSTP 358
           S ++C  PPR TP
Sbjct: 388 SCVACSPPPRQTP 400


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +2

Query: 14  QRPQHKHTQSSRCATTMLLRL*STMAPACARPVSPAT 124
           +RPQ+K   +   +  +L+R        C  P  P+T
Sbjct: 360 RRPQYKFETNRYSSGRVLMRTVRGKEKTCYYPYHPST 396


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +2

Query: 14  QRPQHKHTQSSRCATTMLLRL*STMAPACARPVSPAT 124
           +RPQ+K   +   +  +L+R        C  P  P+T
Sbjct: 360 RRPQYKFETNRYSSGRVLMRTVRGKEKTCYYPYHPST 396


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -1

Query: 220 RHPRRSLSGPYRPSRPGGEG 161
           +HP R   G  R     GEG
Sbjct: 389 KHPNRRARGQLRTKIESGEG 408


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 50 ILNFVCVCVG 21
          I++ +CVCVG
Sbjct: 6  IISAICVCVG 15


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 50 ILNFVCVCVG 21
          I++ +CVCVG
Sbjct: 6  IISAICVCVG 15


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 50 ILNFVCVCVGDAGI 9
          I++ +C+CVG   I
Sbjct: 6  IISAICICVGALSI 19


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 249 SEVPHRARYHHQ 284
           S+ PH+  +HHQ
Sbjct: 807 SQPPHQQLHHHQ 818


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,919
Number of Sequences: 438
Number of extensions: 2122
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)