Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30879
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h at...   189   2e-48
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h
           atpase protein 8 protein.
          Length = 226

 Score =  189 bits (461), Expect = 2e-48
 Identities = 100/215 (46%), Positives = 130/215 (60%)
 Frame = +1

Query: 67  LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 246
           +SD DVQKQ++HMMAFIEQ                FNIEKGRLVQQQR KIM        
Sbjct: 3   ISDNDVQKQLRHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRQKIMEFFEKKEK 62

Query: 247 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 426
                  IQ+SN LN  RL+ LK REDH+  VLDEAR  L+ +  D   Y  +L  L++Q
Sbjct: 63  QVELQRKIQASNSLNAGRLRCLKAREDHIGAVLDEARSNLSRISGDAARYPAILKGLVMQ 122

Query: 427 ALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDVVLKVDTENFLSPDTCGGIE 606
            L QL+E  V +R R+ D  LVE LL +     + +      + +D +NFL  ++ GG+E
Sbjct: 123 GLLQLLEKEVVLRCREKDLRLVEQLLPECLDGLQKEWGSTTKVVLDKQNFLPSESAGGVE 182

Query: 607 LVAARGRIKISNTLESRLELIAQQLLPEIRNALFG 711
           L A  G+IK+S+TLESRLELIA Q++P++R ALFG
Sbjct: 183 LSARAGKIKVSSTLESRLELIANQIVPQVRTALFG 217


>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical
           protein R09H10.5 protein.
          Length = 1603

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 27/101 (26%), Positives = 43/101 (42%)
 Frame = +1

Query: 451 TVTIRVRQTDKALVESLLGKAQTDYKNKIKKDVVLKVDTENFLSPDTCGGIELVAARGRI 630
           +VTI     D+ L++++     T    + K  V +  D+EN L P               
Sbjct: 280 SVTIAPSSDDQPLLDAIANSQSTQPTMRPKSTVYVFADSENLLDPTP-----------ST 328

Query: 631 KISNTLESRLELIAQQLLPEIRNALFGRTLTVNSPINSTVN 753
            +S+T ES   ++ QQ L      +F  + T +SPI  T N
Sbjct: 329 LLSSTNES---MVIQQTLAWRNKIIFVLSQTTSSPIEPTGN 366


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,764,485
Number of Sequences: 27780
Number of extensions: 317264
Number of successful extensions: 971
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)