Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30878
         (825 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p...    29   3.1  
Z81487-6|CAB03996.2|  872|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AL032635-6|CAE18002.1|  193|Caenorhabditis elegans Hypothetical ...    28   9.3  

>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
           protein F26D2.10 protein.
          Length = 1213

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 21/72 (29%), Positives = 35/72 (48%)
 Frame = +1

Query: 298 SSYKCLSSCRNDGTNSKRWNFEHRTWIDAITWSSGLIIGWYTSQLIHIKYKYHSNQYQKK 477
           +SY+ LS+ ++    +       +T  + IT S G I+G   S L  ++     +QY K 
Sbjct: 511 NSYEFLSTIKSIAKIASELQVVQKT-AENITVSDGNILGDLISNLSLVETSKCFSQYYKT 569

Query: 478 CPTLSHIVNSLR 513
            PTL   V+ L+
Sbjct: 570 MPTLESTVSKLK 581


>Z81487-6|CAB03996.2|  872|Caenorhabditis elegans Hypothetical
           protein C54E10.1 protein.
          Length = 872

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 655 RKNSSENDLG-QVLNSIENQLGLAAIENGHY 744
           RK++ E  LG +V+N I +QL    +++ HY
Sbjct: 379 RKSNMERSLGSEVMNDISSQLLFGTVDSNHY 409


>AL032635-6|CAE18002.1|  193|Caenorhabditis elegans Hypothetical
           protein Y51A2A.11 protein.
          Length = 193

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 658 KNSSENDLGQVLNSIENQLGLAAIENGHYED 750
           ++++ N +GQ   ++ +  G AA  NGH+ D
Sbjct: 24  QDAASNIIGQATRAVGDAAGAAAAANGHHSD 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,828,770
Number of Sequences: 27780
Number of extensions: 343693
Number of successful extensions: 938
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)