Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30878
         (825 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31540.1 68417.m04478 exocyst subunit EXO70 family protein (E...    30   1.6  
At4g26140.1 68417.m03762 beta-galactosidase, putative / lactase,...    29   3.7  
At5g56870.1 68418.m07097 beta-galactosidase, putative / lactase,...    29   5.0  
At1g01920.1 68414.m00110 SET domain-containing protein low simil...    28   8.7  

>At4g31540.1 68417.m04478 exocyst subunit EXO70 family protein
           (EXO70-G1) tomato leucine zipper-containing protein -
           Lycopersicon esculentum, PIR2:S21495; contains Pfam
           domain PF03081: Exo70 exocyst complex subunit;
          Length = 687

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
 Frame = -3

Query: 478 ISFDTDYCGICILYESADLCTSQLLIHCSM*WHQSKFCAQNSIVCCLSRHSYTSSSI-YK 302
           +SF TDYC   I  +     T  LLIH S  W   +F     +V  L        ++   
Sbjct: 433 VSFVTDYCNKLIGDKYKSTLTQVLLIHKS--WRSERFQDNQLMVEVLRIIKAIEQNLDVW 490

Query: 301 MKTNEMEYIDFFHQMNSNC*QHQQCYGSQIGLHFFQRYL 185
           MK    + +  F  MN++   ++   G+ IG H    +L
Sbjct: 491 MKAYPDQTLAHFFGMNNHWHLYKNLKGTNIGDHLGDSWL 529


>At4g26140.1 68417.m03762 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase precursor
           GI:3869280 from [Carica papaya]
          Length = 728

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 277 CTPSRWFSSYKCLSSCRNDGTNSKRWNFEHRTWI 378
           C+ +  F+  KCLS+C   G  S+RW    R+W+
Sbjct: 670 CSYAGTFTEKKCLSNC---GEASQRWYHVPRSWL 700


>At5g56870.1 68418.m07097 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase precursor
           GI:3869280 from [Carica papaya]
          Length = 724

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 277 CTPSRWFSSYKCLSSCRNDGTNSKRWNFEHRTWI 378
           C  +  F + KCLS+C   G  S+RW    R+W+
Sbjct: 669 CNYAGTFDAKKCLSNC---GEASQRWYHVPRSWL 699


>At1g01920.1 68414.m00110 SET domain-containing protein low
           similarity to SP|Q43088 Ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit N-
           methyltransferase, chloroplast precursor (EC 2.1.1.127)
           {Pisum sativum}; contains Pfam profile PF00856: SET
           domain
          Length = 572

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 331 DGTNSKRWNFEHRTWIDAITWSSGLII 411
           DG +  + +FEH  W +++ WS  L I
Sbjct: 167 DGDSESKVSFEHFLWANSVFWSRALNI 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,464,460
Number of Sequences: 28952
Number of extensions: 299041
Number of successful extensions: 701
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)