Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30874
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33376| Best HMM Match : Peptidase_C13 (HMM E-Value=0.00035)         30   1.7  
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    29   3.0  
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_33376| Best HMM Match : Peptidase_C13 (HMM E-Value=0.00035)
          Length = 1008

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 335 DGLALTLSNDVHGNDGRLAFGDGKDKTSPKVSWKFIALWENNKVY 469
           D L   L +  HG DG L F D ++ TS +++  F  +W+  + +
Sbjct: 127 DCLLYILFSPGHGGDGFLKFQDAEEVTSVELADAFEQMWQKQRYH 171


>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +3

Query: 48  QIPTSLTTFWRSSFTIASSLPITTVRLKRASIYTRRRRAKSSQM 179
           +IPTS     R SFTI   +P + VR  R S +T  RR  +S++
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRV 445



 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +3

Query: 48  QIPTSLTTFWRSSFTIASSLPITTVRLKRASIYTRRRRAKSSQM 179
           +IPTS     R SFT+   +P + VR  R S +T  RR  +S++
Sbjct: 146 RIPTSRVRQTRLSFTMVRRIPTSRVRQTRLS-FTMVRRIPTSRV 188


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +3

Query: 108  PITTVRLKRASIYTR-RRRAKSSQM**TN*YETTR*TAWSTPINFGSRAPRTSSVIVSQL 284
            P T +   R+S  T  RRR +++Q+  T  Y+ T  T+    +   SR   T ++ VS  
Sbjct: 3951 PTTGISESRSSSVTSIRRRFENNQLEET--YKRTETTSLVMDVQERSRESTTLAIDVSPR 4008

Query: 285  SSDLSSPKTP 314
            +  ++SP+TP
Sbjct: 4009 APSVTSPRTP 4018


>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = -2

Query: 403 TVAEGKSAIVAVNIITQRQSETVALVHKLNGVFGEDKSELNWETITDDVLGALEPKLIGV 224
           TVA+    ++   I +    +  ++V +     G D SE  ++  T +VL ALE + + +
Sbjct: 71  TVAKTGMILLCGEITSNAVVDYQSVVRQCIKDIGYDDSEKGFDYKTCNVLVALEQQSVDI 130

Query: 223 LHAVHL 206
            H VH+
Sbjct: 131 AHGVHV 136


>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -1

Query: 713 HCIPRPCGYPRFQASSTVSKPCCI---HGCRCRTNCLCR 606
           HC+PR      F  ++T  +  C+   +G RC   CL R
Sbjct: 510 HCVPRNDSSGHFSCNTTSGEKVCLRDWYGDRCEIFCLSR 548


>SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1498

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 23/97 (23%), Positives = 43/97 (44%)
 Frame = +2

Query: 74   LEEQLYNSIVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGS 253
            L   L N I  A   +A  +   L++E K ++++NVV + +    +   + A++ W Q  
Sbjct: 810  LNRLLRNEISNAQGPNAAGQKNFLFQEVK-DILSNVVQRNMVRESLQAKKDAFESWRQVI 868

Query: 254  KDIVRDCFPVEFRLIFAENAIKLMYKRDGLALTLSND 364
            +  +  C P +  L   + A+ L   +D L      D
Sbjct: 869  EVALATC-PGDILLQDVKQAVILETLQDLLMKIAQED 904


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,279,061
Number of Sequences: 59808
Number of extensions: 417778
Number of successful extensions: 4440
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4440
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)