Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30874
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    26   0.32 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    26   0.32 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.1  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -1

Query: 734 GTSGSLYHCIPRPCGYPRFQASSTVSKPCCIHGCRCRTNCLCRI*RAAGTTGL 576
           G +G+   C   P  + R + ++ V K           NCL +I +A G TGL
Sbjct: 123 GAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGL 175


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -1

Query: 734 GTSGSLYHCIPRPCGYPRFQASSTVSKPCCIHGCRCRTNCLCRI*RAAGTTGL 576
           G +G+   C   P  + R + ++ V K           NCL +I +A G TGL
Sbjct: 123 GAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGL 175


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 595 LQVPLGSETIDAVDSEGHVVAVRVSTDSQYQILVT 491
           L+ P+G+E+   V S G  +   +  D + Q+L+T
Sbjct: 38  LERPVGNESEPLVLSFGLTLMQIIDVDEKNQLLIT 72


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 59  VPNDILEEQLYNSIVVADYDSAVEK 133
           VP+++  + LYN +VV++  S   K
Sbjct: 566 VPDEVPSDVLYNRLVVSEDGSETFK 590


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 59  VPNDILEEQLYNSIVVADYDSAVEK 133
           VP+++  + LYN +VV++  S   K
Sbjct: 566 VPDEVPSDVLYNRLVVSEDGSETFK 590


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 473 KILNTERNQYLVLGVGTNSN 532
           ++ NT+RN+YL+     N N
Sbjct: 366 RVNNTQRNEYLLALSDRNQN 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,975
Number of Sequences: 438
Number of extensions: 3706
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)