Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30874
(737 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea... 34 0.086
At5g56690.1 68418.m07076 F-box family protein contains F-box dom... 31 1.1
At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b... 31 1.1
At5g63450.1 68418.m07965 cytochrome P450, putative 30 1.4
At3g48520.1 68416.m05296 cytochrome P450 family protein similar ... 30 1.8
At2g23240.2 68415.m02776 plant EC metallothionein-like family 15... 30 1.8
At2g23240.1 68415.m02775 plant EC metallothionein-like family 15... 30 1.8
At4g39510.1 68417.m05587 cytochrome P450 family protein contains... 29 2.4
At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identica... 29 2.4
At5g64820.1 68418.m08155 hypothetical protein 29 4.3
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 29 4.3
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 29 4.3
At5g03800.1 68418.m00347 exostosin family protein / pentatricope... 28 5.6
At2g42000.1 68415.m05195 plant EC metallothionein-like family 15... 28 5.6
At5g16590.1 68418.m01942 leucine-rich repeat transmembrane prote... 28 7.4
At2g04620.1 68415.m00470 cation efflux family protein potential ... 28 7.4
At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family pr... 28 7.4
At5g07400.1 68418.m00847 forkhead-associated domain-containing p... 27 9.8
At4g28590.1 68417.m04089 expressed protein 27 9.8
>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400); low
similarity (47%) to Agamous-like MADS box protein AGL5
(SP:P29385) {Arabidopsis thaliana}
Length = 892
Score = 34.3 bits (75), Expect = 0.086
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = -2
Query: 454 LPQSNELPADFRACFVLTVAEGKSAIVAV--------NIITQRQSETVALVHKLNGVFGE 299
L + +LP DF +C + ++ G A+ V N + Q +S+ A+ NG
Sbjct: 482 LSSTTDLPDDFLSCLGVALSPGNLAVALVRNFNVELLNPMYQARSQKAAVEFLWNGAQQS 541
Query: 298 DKSELNWETITDDVLG 251
+SE + ET+T+ +LG
Sbjct: 542 GESEDSTETVTEAILG 557
>At5g56690.1 68418.m07076 F-box family protein contains F-box domain
Pfam:PF00646
Length = 402
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 455 NNKVYFKILNTERNQYLVLGVGTNSNGDHMAFGVNSVDSFRAQWYLQPAKYDKDNLFYIY 634
N+K ++K + +YL + N F +NS+++FR +WY + D+D L I+
Sbjct: 333 NSKSFYK---EKIGEYLPVSWSKNQGSVPKCF-LNSLETFRVKWYYSEEQEDRDFLSLIF 388
>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
binding region-containing protein similar to U4/U6
snRNP-associated 61 kDa protein [Homo sapiens]
GI:18249847; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 485
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +2
Query: 2 PVIVILCLFVASLYAADSDVPNDILEEQLYNSIVVADYDSAVEKSKHLYEEKKSEVITNV 181
P +I+ + V +L S +P D+L++ L D DSA +K E K + N+
Sbjct: 161 PSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKMGSIAPNL 220
>At5g63450.1 68418.m07965 cytochrome P450, putative
Length = 510
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +2
Query: 401 GKDKTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVG 520
G+D TS ++W F L +N+ V KIL+ RN+ LG+G
Sbjct: 306 GRDTTSAAMTWLFWLLSQNDDVETKILDELRNKG-SLGLG 344
>At3g48520.1 68416.m05296 cytochrome P450 family protein similar to
Cytochrome P450 94A1 (P450-dependent fatty acid
omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains
Pfam profile: PF00067 cytochrome P450
Length = 506
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +2
Query: 401 GKDKTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVG 520
G+D TS ++W F L EN+ V KIL E + + LG+G
Sbjct: 304 GRDTTSAAMTWLFWLLTENDDVERKILE-EVDPLVSLGLG 342
>At2g23240.2 68415.m02776 plant EC metallothionein-like family 15
protein identical to EC protein homolog 2 (SP:Q42377)
{Arabidopsis thaliana}; identical to an EST:
GB:X92116:ATECPRHOM; contains a vertebrate
metallothionein signature (PS00203); contains Pfam
profile PF02068: Plant PEC family metallothionein
Length = 84
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -1
Query: 713 HCIPRPCGYPRFQASSTVSKPCCIHGCRCRT 621
HC PC P+ Q ++ C GC C T
Sbjct: 51 HCGCNPCNCPKTQTQTSAKGCTCGEGCTCAT 81
>At2g23240.1 68415.m02775 plant EC metallothionein-like family 15
protein identical to EC protein homolog 2 (SP:Q42377)
{Arabidopsis thaliana}; identical to an EST:
GB:X92116:ATECPRHOM; contains a vertebrate
metallothionein signature (PS00203); contains Pfam
profile PF02068: Plant PEC family metallothionein
Length = 85
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -1
Query: 713 HCIPRPCGYPRFQASSTVSKPCCIHGCRCRT 621
HC PC P+ Q ++ C GC C T
Sbjct: 52 HCGCNPCNCPKTQTQTSAKGCTCGEGCTCAT 82
>At4g39510.1 68417.m05587 cytochrome P450 family protein contains
Pfam PF00067: Cytochrome P450; similar to Cytochrome
P450 86A2 (SP:O23066) [Arabidopsis thaliana]
Length = 508
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 347 LTLSNDVHGNDGRLAFG-DGKDKTSPKVSWKFIALWENNKVYFKI 478
L S+D D LAF G+D TS +SW F L EN +V KI
Sbjct: 293 LNPSDDKFLRDTILAFNLAGRDTTSSALSWFFWLLSENPQVVTKI 337
>At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identical
to Anthocyaninless2 [Arabidopsis thaliana] GI:5702094
Length = 802
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 482 NTERNQYLVLGVGTNSNGDHMAF 550
N N L L VGTN+NG H AF
Sbjct: 270 NHHYNSSLELAVGTNNNGGHFAF 292
>At5g64820.1 68418.m08155 hypothetical protein
Length = 145
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -2
Query: 415 CFVLTVAEGKSAIVAVNIITQRQSETVALVHKLNGVFGEDKSELNWETI 269
C ++ + G SA A + ++ E ++V ++G+FG +WE I
Sbjct: 15 CIIIILISGVSADGAESDSAAKKEENPSIVKIISGIFGNKFPPSSWELI 63
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = -2
Query: 550 EGHVVAVRVSTDSQYQILVTLSVQDLEVDLVVLPQSNELPADFRACFVLTVAEG-KSAIV 374
+ + A S + + LV+ S +++ +L++LP ++LPAD +A +G + IV
Sbjct: 747 QDEIEAACFSLKERMEQLVSSSSREI-TNLLILPIYSQLPADLQAKIFQKPEDGARKCIV 805
Query: 373 AVNI 362
A NI
Sbjct: 806 ATNI 809
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = -2
Query: 469 VDLVVLPQSNELPADFRACFVLTVAEGKSAIVAVNIITQRQSETVALVHKLNGVFGEDKS 290
VDLV+ P D+ T G+ + AV+IIT+ V L+HK+ G+
Sbjct: 371 VDLVINYDIPRDPRDYVHRVGRTARAGRGGL-AVSIITETD---VKLIHKIEEEVGKKME 426
Query: 289 ELNWETITDDV 257
N + ITD +
Sbjct: 427 PYNKKVITDSL 437
>At5g03800.1 68418.m00347 exostosin family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF03016 exostosin family,
PF01535 PPR repeat
Length = 1388
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -3
Query: 513 PNTKYWLRSVFKILK*TLLFSHRAMNFQLTFGLV 412
PNT+Y L+ V + +K + LF H A +T+G++
Sbjct: 806 PNTEYVLQEVDEFMKKSFLFHHSA-KLAVTYGIL 838
>At2g42000.1 68415.m05195 plant EC metallothionein-like family 15
protein 84 C-terminal residues identical to EC protein
homolog 1 (SP:P93746) {Arabidopsis thaliana}; contains
Pfam PF02068: Plant PEC family metallothionein profile;
Length = 115
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = -1
Query: 713 HCIPRPCGYPRFQASSTVSKPCCIHGCRC 627
HC PC P+ Q ++ C GC C
Sbjct: 82 HCGCNPCNCPKTQTQTSAKGCTCGEGCTC 110
>At5g16590.1 68418.m01942 leucine-rich repeat transmembrane protein
kinase, putative
Length = 625
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 319 LNGVFGEDKSELNWETITDDVLGALEPKLIGVLHAVHLVVSY 194
L+G G +S LNWET + LGA + I LH+ S+
Sbjct: 427 LHGNKGSGRSPLNWETRANIALGA--ARAISYLHSRDATTSH 466
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 91 VKLLLQNVVRDVGICSIQRCHEKT*NNYD 5
+K ++N+++ G+CSIQR H + N D
Sbjct: 727 LKEAMRNILKTKGVCSIQRLHVWSFTNSD 755
>At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family
protein similar to CHY1 [gi:8572760]; contains Pfam
profile PF00388 enoyl-CoA hydratase/isomerase family
protein
Length = 387
Score = 27.9 bits (59), Expect = 7.4
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Frame = +2
Query: 161 SEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRL---IFAENAIKLMYK 331
+E IT V+ L R++ ++ Q +G K + DC EFRL I + MY
Sbjct: 263 NEWITPVIKGLKRSSPTG-LKIVLQSIREGRKQTLSDCLKKEFRLTLNILRKTISPDMY- 320
Query: 332 RDGL-ALTLSNDVHGNDGRLAFGDGKDKTSPKVSWKFIALWENNKVYFKILNTERNQY 502
+G+ ALT+ D + D+ K++ F L+E++ + +I TE N++
Sbjct: 321 -EGIRALTIDKDNSPKWNPATLDEVDDE---KINSVF-KLFEDDDIELQIPETEENRW 373
>At5g07400.1 68418.m00847 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 1084
Score = 27.5 bits (58), Expect = 9.8
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = -2
Query: 427 DFRACFVLT--VAEGKSAIVAVNIITQRQSETVALVHKLNGVFGEDKSELNWETITDDVL 254
D R FV+ V EG+ A + V++ + T + + VF ++E+N V
Sbjct: 153 DGRVGFVVQEIVFEGRDASI-VSVSSGHSRGTFSSGKRSKRVFAPMENEIN-----SPVS 206
Query: 253 GALEPKLIGVLHAVHLVVSY 194
G PK +GV+ V+ +VSY
Sbjct: 207 GFYPPKAVGVVERVNSLVSY 226
>At4g28590.1 68417.m04089 expressed protein
Length = 331
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 325 HKLNGVFGEDKSELNWETITDD 260
H + V G+D SE++WE DD
Sbjct: 180 HPIKNVVGDDGSEIDWEGEIDD 201
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,717,425
Number of Sequences: 28952
Number of extensions: 284811
Number of successful extensions: 1118
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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