Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30873
(724 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 365 e-102
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 183 2e-47
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 173 2e-44
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 124 2e-29
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 97 2e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 94 2e-20
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 85 7e-18
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 71 2e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 43 4e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.6
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 2.7
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 8.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 365 bits (898), Expect = e-102
Identities = 170/193 (88%), Positives = 182/193 (94%)
Frame = +3
Query: 3 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYEL 182
RDLTDYLMKIL ERGY+F+TTAEREIVRDIKEKLCYVALDFEQE+ TAA S+SLEKSYEL
Sbjct: 183 RDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYEL 242
Query: 183 PDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGG 362
PDGQVITIGNERFR PEALFQPS LG+E+ GIHE YNSIMKCDVDIRKDLY N VMSGG
Sbjct: 243 PDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGG 302
Query: 363 TTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEY 542
TTMYPGIADRMQKEI ALAPS++K+KI+APPERKYSVWIGGSILASLSTFQQMWISK+EY
Sbjct: 303 TTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Query: 543 DESGPGIVHRKCF 581
DESGPGIV+RKCF
Sbjct: 363 DESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 183 bits (446), Expect = 2e-47
Identities = 85/193 (44%), Positives = 127/193 (65%)
Frame = +3
Query: 3 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYEL 182
RD+TDYL L + G+ ++AE+EIVR+IKEK CYVA DF E+ + +Y+L
Sbjct: 188 RDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQL 247
Query: 183 PDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGG 362
PD Q IT+G E F PE LF P +G E+ G+H ++ SI+ D+D+R LY+N V+SGG
Sbjct: 248 PDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGG 307
Query: 363 TTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEY 542
+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ EEY
Sbjct: 308 STLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY 367
Query: 543 DESGPGIVHRKCF 581
++ ++ R+ F
Sbjct: 368 -KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 173 bits (422), Expect = 2e-44
Identities = 86/196 (43%), Positives = 129/196 (65%), Gaps = 12/196 (6%)
Frame = +3
Query: 3 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYEL 182
RD T YL+ +L +GY+F TA+ E VR++KEKLCYV+ D E + + +T L ++Y L
Sbjct: 183 RDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTL 242
Query: 183 PDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGG 362
PDG+VI +G+ER+ CPE LFQP +G E G+ E ++++I DVDIRK LY V+SGG
Sbjct: 243 PDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGG 302
Query: 363 TTMYPGIADRMQKEITAL--------APSTI---KIKIIAPPERKYSVWIGGSILAS-LS 506
++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++LA ++
Sbjct: 303 SSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMA 362
Query: 507 TFQQMWISKEEYDESG 554
MW+SK E++E G
Sbjct: 363 QNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 124 bits (298), Expect = 2e-29
Identities = 70/179 (39%), Positives = 97/179 (54%), Gaps = 11/179 (6%)
Frame = +3
Query: 51 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCP 230
S+ +R ++ + KE + V + A AS+ K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV---LDTPFDEAKASSRNPKPFEFPDGVTHKFGQERFRIS 299
Query: 231 EALFQPSFLGMESC---------GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGI 383
E LF PSF S G+HE VY SI+ CD ++R L N V++GGT++ PG+
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGL 359
Query: 384 ADRMQKEITALAP-STIKIKII-APPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 554
++R+Q E+ LA S I + +VW GGSILASL FQ +W+SK+EYDE G
Sbjct: 360 SERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 97.1 bits (231), Expect = 2e-21
Identities = 66/209 (31%), Positives = 101/209 (48%), Gaps = 20/209 (9%)
Frame = +3
Query: 9 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAAS--TSLEKSYEL 182
LT+YL ++++ R Y+ E IV +IKE +CYV+ +F+++M + LE Y L
Sbjct: 193 LTNYLKEVISYRKYNMME--ETYIVNEIKESVCYVSQNFKEDMEICHEKPRSKLEICYAL 250
Query: 183 PD------------------GQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMK 308
PD QV+ + NERF PE LF PS + + GI E V S+
Sbjct: 251 PDYSTGKHGYIVRDINQKIEQQVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTH 310
Query: 309 CDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGS 488
+I+ L N V GG +PG R+ E+ +LAP+ ++K+ P + W S
Sbjct: 311 FPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKAS 370
Query: 489 ILASLSTFQQMWISKEEYDESGPGIVHRK 575
+ L + I++ EY E G I+ RK
Sbjct: 371 HM-PLEHWNANKITRSEYSEHGANIMTRK 398
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 93.9 bits (223), Expect = 2e-20
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Frame = +3
Query: 273 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 452
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 453 P---ERKYSVWIGGSILASLSTFQQMWISKEEYDESGP---GIVHRKC 578
ER Y+ W+GGSIL+SL TF Q+WIS++EY+E G ++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 85.4 bits (202), Expect = 7e-18
Identities = 63/211 (29%), Positives = 98/211 (46%), Gaps = 21/211 (9%)
Frame = +3
Query: 3 RDLTDYLMKILTERGY--SFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTS--LEK 170
RD+T ++ +L +R S TAER IKE+ CYV D +E + L+
Sbjct: 214 RDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYVCPDIVKEFSRFDREPDRYLKY 268
Query: 171 SYELPDGQVITI--GNERFRCPEALFQPSFLGMESCG-IHETVYNSIMKCDVDIRKDLYA 341
+ E G TI G ERF PE F P + + E V N + +D+RK LY
Sbjct: 269 ASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYK 328
Query: 342 NTVMSGGTTMYPGIADRMQKEITALAPSTI--------------KIKIIAPPERKYSVWI 479
N V+SGG+T++ +R+Q+++ + I + +I+ ++ +VW
Sbjct: 329 NIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWF 388
Query: 480 GGSILASLSTFQQMWISKEEYDESGPGIVHR 572
GGS+LA F +K +Y+E G I R
Sbjct: 389 GGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 70.9 bits (166), Expect = 2e-13
Identities = 32/115 (27%), Positives = 62/115 (53%)
Frame = +3
Query: 213 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 392
E+ R PE +F PS +G++ GI E + + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 393 MQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 557
+++E+T++ P I + W G S + F+ +++EEY E GP
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +3
Query: 327 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 497
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 498 SLSTFQQMWISKEEYDESGPGIVHRK 575
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +3
Query: 474 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 575
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 399 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 509
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 278 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 406
PR+ V R+R P P + R V PR RRQ +G+
Sbjct: 41 PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,941
Number of Sequences: 5004
Number of extensions: 49413
Number of successful extensions: 151
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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