Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30872
         (331 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   0.97 
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    25   3.0  
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha...    25   3.9  
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|...    25   3.9  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   3.9  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    24   6.8  
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    24   6.8  
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    24   6.8  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    23   9.0  

>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 26.6 bits (56), Expect = 0.97
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 238 HLMVSGYPRPWTSAMPGAEPSRCLPNSRPINPSYSSVSHFD 116
           H + S    P+T A     P   +PN+  + PSYSS    D
Sbjct: 280 HPVQSSNFNPYTPAPSITVPPNYIPNTAMMGPSYSSFGDTD 320


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 321 IGRIGYRAPPRVFFFFFYCPGRQSSIRL 238
           + R   RAP + FF +F+ P R  S+ L
Sbjct: 487 VPRSSDRAPSKTFFLWFHRPDRAYSLLL 514


>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 240 LT*W*VVTLAHGLQQCQGQSQAAAYRI 160
           +T W +V+L HGLQ C   +   A+ +
Sbjct: 200 VTNWTLVSLNHGLQSCMDPNTINAHLV 226


>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 405

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 217 PRPWTSAMPGAEPSRCLPNSRPINPSYSSV 128
           P P   AM   EP  CL     + PS++ V
Sbjct: 95  PLPLVKAMYALEPKLCLAKRSFVAPSFNDV 124


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 58  IKYLKKKQTYLVCYTHLNENQSAIH 132
           IKYLK + +  V YT+++    A++
Sbjct: 529 IKYLKNRSSGFVAYTNISNAMKAVN 553


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 208 WTSAMPGAEPSRCLPNSRPINPSYSSVSHFDFHLSAYSTL 89
           +TSA+P      C P  R I+ S+  +      L+ YS L
Sbjct: 286 FTSAIPSQRIEGCRPELRLIDSSFKELCGDAIGLANYSRL 325


>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +1

Query: 43  LSYQVIKYLKKKQTYLVCYTHLNENQSAIHY-YNLD*LAGYSVSSGLALPLALLKSMGEG 219
           +S  +   LK+ ++  V ++HL   Q  +    NL+     SVS  L   + +LKS+ E 
Sbjct: 61  VSSNIYDTLKEMESLQVIHSHLPVLQKGLQECQNLN----KSVSQNLKSVMDILKSLAED 116

Query: 220 NHSPSGEP 243
             S  G P
Sbjct: 117 YTSLEGSP 124


>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 254 SRAYGSPDGEWLPSPMDFSNARGR 183
           S+  G+    W P P+D SNA  R
Sbjct: 74  SKYIGATVSGWAPGPLDGSNAAWR 97


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -1

Query: 247 HTAHLMVSGYPRPWTSAMPGAEPSRCLPNSRP 152
           H  H M S    PW      A  ++CL +  P
Sbjct: 400 HGYHFMASSTELPWLRVTCNAIVTKCLDSQLP 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,308,124
Number of Sequences: 5004
Number of extensions: 23940
Number of successful extensions: 59
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)