Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30872
(331 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0040 + 10882897-10884744,10885568-10885666 29 0.89
11_06_0344 + 22540436-22540737,22541304-22543545 29 1.2
06_03_0259 - 18851809-18852561,18852659-18852895 27 2.7
01_06_1320 + 36272716-36273339,36274222-36275762,36276349-362764... 27 4.7
12_02_0717 + 22481418-22482692,22482895-22482915 26 6.2
03_06_0415 - 33775143-33775305,33775438-33775565,33775654-337757... 26 6.2
02_03_0407 - 18675368-18675378,18676047-18676977,18677323-186773... 26 6.2
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 26 8.3
01_06_0153 - 27044553-27044669,27044842-27044964,27045066-270451... 26 8.3
>06_02_0040 + 10882897-10884744,10885568-10885666
Length = 648
Score = 29.1 bits (62), Expect = 0.89
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +1
Query: 40 GLSYQVIKYLKKKQTYLVCYTHLNENQSAIHYYNLD*LAGYSVSSGLALPLALLKSMG 213
GL + +L+ Q L+C L E Q A+ + L G ++ LALPLA ++S G
Sbjct: 91 GLYRLLADFLRPLQWALLCSIPLRETQRALVAFWEPPLRGGLGAAVLALPLAAVRSCG 148
>11_06_0344 + 22540436-22540737,22541304-22543545
Length = 847
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 266 ALVGSRAYGSPDGEWLPS-PMDFSNARGRAKPLLTE*P 156
ALVGSR P WLPS P++ S GR P +T P
Sbjct: 30 ALVGSRDLERPRSPWLPSEPVNCSGGLGR--PWMTPEP 65
>06_03_0259 - 18851809-18852561,18852659-18852895
Length = 329
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 172 SGLALPLALLKSMGEGNHSPSGEPYA 249
+ L+L LA+L S GEG+H P P A
Sbjct: 10 ASLSLLLAVLASTGEGSHQPVVMPVA 35
>01_06_1320 +
36272716-36273339,36274222-36275762,36276349-36276490,
36276622-36276729,36276814-36277026,36277113-36277223,
36278056-36278250,36278874-36279048,36279189-36279226
Length = 1048
Score = 26.6 bits (56), Expect = 4.7
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 151 LAGYSVSSGLALPLALLKSMGEGNHSPSGEPYARLPTRAIKKKKKNSRGGPVPNSP 318
L GY +S GL P ++ MG GN P E A A + G + +SP
Sbjct: 482 LGGYPLSPGL--PSMMMNCMGSGNMPPLFESAAAASAIASFGADSRNLGNNILSSP 535
>12_02_0717 + 22481418-22482692,22482895-22482915
Length = 431
Score = 26.2 bits (55), Expect = 6.2
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +1
Query: 151 LAGYSVSSGLALPLALLKSMGEGNHSPSGEPYARLPTRAIKK 276
+ GYSV SGLAL L L G+ S +G +R P RA+++
Sbjct: 52 VTGYSVLSGLALGLEPL--AGQAFGSGTGRTRSR-PRRALRR 90
>03_06_0415 -
33775143-33775305,33775438-33775565,33775654-33775761,
33775809-33775909,33776265-33776805,33777290-33777847
Length = 532
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 269 IALVGSRAYGSPDGEWLPSPMDFSNARGRAK 177
+AL +R GSPDG+ LP P D ++ G K
Sbjct: 118 LALACTRNSGSPDGQHLP-PKDTTSMPGLRK 147
>02_03_0407 -
18675368-18675378,18676047-18676977,18677323-18677376,
18677809-18678039,18678112-18678319,18678405-18678433,
18678638-18678706,18678832-18678893,18679056-18679133,
18679243-18679315,18681135-18681260
Length = 623
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 196 LLKSMGEGNHSPSGEPYARLPTRAIKKKKKNSRGGPVP 309
L K H+ + +P + T +KK K+ S GP+P
Sbjct: 402 LTKDYNGAMHNAATKPSSSSSTDDLKKLKRESWSGPIP 439
>08_02_1277 +
25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 25.8 bits (54), Expect = 8.3
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Frame = -1
Query: 220 YPRPWTSAMPGAEPSRCL-------PNSRPINPSYSSVSHFDFHLSAYSTLGTFAF 74
Y RP A EP+R P+ P +P S +DF + +S+L +FA+
Sbjct: 176 YDRPSYPAASPQEPTRTSYYASYDRPSYPPPSPQEQESSQWDFFWNPFSSLDSFAY 231
>01_06_0153 -
27044553-27044669,27044842-27044964,27045066-27045161,
27045323-27045370,27046360-27046458,27046554-27046592,
27047032-27047133,27047225-27047347,27047535-27047783
Length = 331
Score = 25.8 bits (54), Expect = 8.3
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -1
Query: 244 TAHLMVSGYPRPWTSAMPGAEPSRCLPNSRPINPSYSSV 128
TAHL+ S P P SA P PS P + P + SY V
Sbjct: 12 TAHLLPSSLPLPLASA-PTLAPS---PAASPASDSYRRV 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,884,500
Number of Sequences: 37544
Number of extensions: 174969
Number of successful extensions: 466
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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