Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30872
(331 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_24250| Best HMM Match : ResIII (HMM E-Value=3.6) 27 4.9
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_5331| Best HMM Match : Fork_head (HMM E-Value=0) 26 6.5
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_49730| Best HMM Match : DUF59 (HMM E-Value=8.9) 26 8.5
SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2) 26 8.5
SB_28061| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-17) 26 8.5
SB_45012| Best HMM Match : RVT_2 (HMM E-Value=1.2e-17) 26 8.5
SB_30586| Best HMM Match : RVT_2 (HMM E-Value=0.4) 26 8.5
SB_15639| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_12604| Best HMM Match : PsbH (HMM E-Value=5.9) 26 8.5
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 229 PSGEPYARLPTRAIKKKKKNSRGGPVPNSP 318
P GEPYAR+P + S G P P
Sbjct: 373 PPGEPYARMPPPGATHPRVPSPGASHPRVP 402
>SB_24250| Best HMM Match : ResIII (HMM E-Value=3.6)
Length = 842
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 119 KVRYTTITWINWPAIR*AAAWLC 187
KVR I +INW R WLC
Sbjct: 390 KVREVLIRFINWAIXRSTRIWLC 412
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -1
Query: 217 PRPWTSAMPGAEPSRCLPNSRPINPS 140
P P A P A P+ P P NP+
Sbjct: 1297 PAPAAQAYPSAAPATAYPTQAPANPT 1322
>SB_5331| Best HMM Match : Fork_head (HMM E-Value=0)
Length = 503
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 229 VSGYPRPWTSAMPGAEPSRCLPNSRPINPSYSSVSHFDFHLSA 101
+ + P +S +P + +PNS P +PS + +HF+ +L A
Sbjct: 43 IPDHDAPMSSPLPSPTGTISVPNSCPASPS-NRDTHFESNLHA 84
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 26.2 bits (55), Expect = 6.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 199 AMPGAEPSRCLPNSRPINP 143
A+PG P C P ++P+NP
Sbjct: 1127 AVPGNVPDTCRPVTQPLNP 1145
>SB_49730| Best HMM Match : DUF59 (HMM E-Value=8.9)
Length = 631
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 119 KVRYTTITWINWPAIR*AAAWLC 187
KVR I +INW R WLC
Sbjct: 373 KVREVLIRFINWAIPRSTRIWLC 395
>SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)
Length = 318
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +1
Query: 169 SSGLALPLALLKSMGEGNHSPSGEPYARLPTRA--IKKKKKNSRGGPVPNS 315
SSG+ PLA S + H P G P RA I + + G P P +
Sbjct: 32 SSGIFSPLASSTSASDSRHRPVGGPAYSPTERAYPITDRAYSPTGQPYPKT 82
>SB_28061| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-17)
Length = 384
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 40 GLSYQVIKYLKKKQTYL-VCYTHLNENQSAIHYYNLD*LAGYSVSSGLALPL 192
G+ + V + + T + VCY H SA+ YY++ LAG + S LA+ +
Sbjct: 177 GVYFDVFRIRRDHVTQMIVCYQHWASPHSALVYYSVF-LAGLFLWSLLAIAI 227
>SB_45012| Best HMM Match : RVT_2 (HMM E-Value=1.2e-17)
Length = 412
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 55 VIKYLKKKQTYLVCYTHLNENQSAIHYYNLD 147
V +YLK Y +CY +E+ S + Y + D
Sbjct: 271 VFRYLKGTMEYELCYRKSSEDLSLLGYSDAD 301
>SB_30586| Best HMM Match : RVT_2 (HMM E-Value=0.4)
Length = 283
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 55 VIKYLKKKQTYLVCYTHLNENQSAIHYYNLD 147
V +YLK Y +CY +E+ S + Y + D
Sbjct: 106 VFRYLKGTMEYELCYRKSSEDLSLLGYSDAD 136
>SB_15639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 253 VEHTAHLMVSGYPRPWTSAM 194
+ H L VS YP PW SA+
Sbjct: 111 LNHQVPLYVSRYPDPWASAV 130
>SB_12604| Best HMM Match : PsbH (HMM E-Value=5.9)
Length = 105
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 247 HTAHLMVSGYPRPWTSAMPGAEPSRCL 167
+T + + +GY ++S PG EP +CL
Sbjct: 15 NTEYRLQAGYGLRFSSKRPGYEPGQCL 41
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,023,757
Number of Sequences: 59808
Number of extensions: 191712
Number of successful extensions: 589
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 463065397
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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