Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30872
(331 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g77800.1 68414.m09059 PHD finger family protein contains Pfam... 29 0.75
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 28 1.7
At4g31850.1 68417.m04525 pentatricopeptide (PPR) repeat-containi... 27 2.3
At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa... 27 3.0
At2g45880.1 68415.m05706 glycosyl hydrolase family 14 protein si... 27 4.0
At3g20940.1 68416.m02647 cytochrome P450 family protein similar ... 26 5.3
At3g07100.1 68416.m00845 protein transport protein Sec24, putati... 26 5.3
At5g49130.1 68418.m06081 MATE efflux family protein contains Pfa... 26 7.0
At1g49840.1 68414.m05588 expressed protein contains Pfam profile... 26 7.0
At5g14820.1 68418.m01738 pentatricopeptide (PPR) repeat-containi... 25 9.3
At4g29140.1 68417.m04170 MATE efflux protein-related several hyp... 25 9.3
At3g62540.1 68416.m07026 pentatricopeptide (PPR) repeat-containi... 25 9.3
At3g62470.1 68416.m07018 pentatricopeptide (PPR) repeat-containi... 25 9.3
At3g21380.1 68416.m02699 jacalin lectin family protein similar t... 25 9.3
>At1g77800.1 68414.m09059 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1423
Score = 29.1 bits (62), Expect = 0.75
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +1
Query: 163 SVSSGLALPLALLKSMGEGNHSPSGEPYARLPTRAIKKKKKNSRGG 300
SV S LP+AL + NHS + + + + + A KKKKK+SR G
Sbjct: 75 SVLSVPTLPIALANLLK--NHSDNKKRHKKSHSGADKKKKKSSRQG 118
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 211 GEGNHSPSGEPYARLPTRAIKKKKKNSRGGPVPNSPYSES 330
G +PS P + +PTR + K + + P PN PY++S
Sbjct: 388 GSSQATPSKSP-SPVPTRPVHKPQP-PKESPQPNDPYNQS 425
>At4g31850.1 68417.m04525 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1112
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 151 LAGYSVSSGLALPLALLKSMGEGNHSPSGEPYARLPTRA 267
+ GYS+S A+ ++M G SP+ Y +LP RA
Sbjct: 1074 IRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQLPNRA 1112
>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
family protein contains Pfam profile PF01190: Pollen
proteins Ole e I family
Length = 401
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 229 VSGYPR-PWTSAMPGAEPSRCLPNSRPINPSYSS 131
V G P P +PG P+ +P P++PS+SS
Sbjct: 364 VPGLPGIPPVPLIPGIPPAPLIPGIPPLSPSFSS 397
>At2g45880.1 68415.m05706 glycosyl hydrolase family 14 protein
similar to beta-amylase GI:13560977 from [Castanea
crenata]
Length = 691
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 166 VSSGLALPLALLKSMGEGNHSPSGEPYARLPTRA 267
VSSGL P+ L +G +P+ PY LP ++
Sbjct: 171 VSSGLRSPVELSSCRMKGVFTPAPSPYDMLPIQS 204
>At3g20940.1 68416.m02647 cytochrome P450 family protein similar to
Cytochrome P450 93A3 (P450 CP5) (SP:O81973) [Glycine
max]; similar to cytochrome P450 (SP:H71417)
[Arabidopsis thaliana]
Length = 523
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 205 TSAMPGAEPSRCLPNSRPINPSYSSV 128
T+A+ A+P +C P SR NP SS+
Sbjct: 493 TTALSMAQPLKCTPVSRTKNPLPSSL 518
>At3g07100.1 68416.m00845 protein transport protein Sec24, putative
similar to protein transport protein Sec24A
(SEC24-related protein) [Homo sapiens] SWISS-PROT:O95486
Length = 1038
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 232 MVSGYPRPWTSAMPGAEPSRCLPNSRPINPSY 137
M G P P+ S +PG+ P NS P +P+Y
Sbjct: 72 MRPGQPSPFVSQIPGSRPPPPSSNSFP-SPAY 102
>At5g49130.1 68418.m06081 MATE efflux family protein contains Pfam
profile PF01554: MatE Uncharacterized membrane protein
family
Length = 502
Score = 25.8 bits (54), Expect = 7.0
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +1
Query: 55 VIKYLKKKQTYLVCYTHLNENQSA-----IHYYNLD*LAGYSVSSGLALPLALLKSMGEG 219
++ YLK T +VC L + A I + N+ GYSV SGLA + L G
Sbjct: 42 ILNYLKN-MTSVVCMGRLGSLELAGGALAIGFTNI---TGYSVLSGLATGMEPLCGQAIG 97
Query: 220 NHSPS 234
+ +PS
Sbjct: 98 SKNPS 102
>At1g49840.1 68414.m05588 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 494
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 190 GAEPSRCLPNSRPINPSYSSVSH 122
G PSR P SR +PS S+ H
Sbjct: 18 GLSPSRSRPRSRSASPSRSTTPH 40
>At5g14820.1 68418.m01738 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 598
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +1
Query: 151 LAGYSVSSGLALPLALLKSMGEGNHSPSGEPYARL 255
+ G+ L LLK M E H P G+ Y L
Sbjct: 409 ITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNAL 443
>At4g29140.1 68417.m04170 MATE efflux protein-related several
hypothetical proteins - Arabidopsis thaliana; contains
Pfam profile PF01554: Uncharacterized membrane protein
family
Length = 532
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 151 LAGYSVSSGLALPLALLKSMGEGNH 225
+ GYSV SGLAL + L S G H
Sbjct: 105 ITGYSVLSGLALGMEPLCSQAFGAH 129
>At3g62540.1 68416.m07026 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 599
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +1
Query: 151 LAGYSVSSGLALPLALLKSMGEGNHSPSGEPYARL 255
+ G+ L LLK M E H P G+ Y L
Sbjct: 410 ITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNAL 444
>At3g62470.1 68416.m07018 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 599
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +1
Query: 151 LAGYSVSSGLALPLALLKSMGEGNHSPSGEPYARL 255
+ G+ L LLK M E H P G+ Y L
Sbjct: 410 ITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNAL 444
>At3g21380.1 68416.m02699 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767; contains Pfam profile: PF01419
jacalin-like lectin domain
Length = 455
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 181 ALPLALLKSMGEGNHSPSGEPYARLPTRAIKKKKKNSRGGPVPN 312
AL S G G S + P + PT + KK ++GG V N
Sbjct: 277 ALGAYFAPSSGRGTPSATQPPGSAQPTGSAGAKKLEAKGGNVGN 320
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,895,848
Number of Sequences: 28952
Number of extensions: 128896
Number of successful extensions: 376
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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