Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30871
         (789 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    35   0.003
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    31   0.041
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    29   0.16 
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    29   0.16 
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    28   0.29 

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 34.7 bits (76), Expect = 0.003
 Identities = 21/92 (22%), Positives = 41/92 (44%)
 Frame = +3

Query: 237 KKKLEADINELEIALDHANKANAEAQKNIKRYQAQIKDLQTALXXXXXXXXXXXXXLGIS 416
           +++L+ ++NEL  A    ++   E  + + + Q  +K LQ  L             +   
Sbjct: 718 REQLQRELNELNSAYAKEDERLQEMTRKLHQRQQHMKKLQQELLTNEQQLQQLAGVVFEG 777

Query: 417 ERRANALQNELEESRTLLEQADRARRQAEQEL 512
           E     L+ ELE SRT+L +  +   + + +L
Sbjct: 778 ETEETTLREELEHSRTILAKLQKGIEEEQAKL 809



 Score = 25.0 bits (52), Expect = 2.7
 Identities = 18/93 (19%), Positives = 35/93 (37%)
 Frame = +3

Query: 240 KKLEADINELEIALDHANKANAEAQKNIKRYQAQIKDLQTALXXXXXXXXXXXXXLGISE 419
           KKL   I E E  + +     A+    I  Y+A I+  +                L   +
Sbjct: 336 KKLRTSIEEQEHRIRNREALVAKTDSTIDTYRADIESKKQEYVALKEAYGTVRRTLQDVQ 395

Query: 420 RRANALQNELEESRTLLEQADRARRQAEQELSD 518
            +  A++  +  +   + +  +  RQ EQ+L +
Sbjct: 396 AKQAAIERGMRNASERVTRIQKDARQIEQDLQE 428


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 31.1 bits (67), Expect = 0.041
 Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
 Frame = +3

Query: 243 KLEADINELEIALDHANKANAEAQKNIKRYQAQIKDLQTA---LXXXXXXXXXXXXXLGI 413
           +L+++IN+     ++  K  +E  + +KR +  I  ++T+   L             +G 
Sbjct: 416 RLDSEINKKAQIEENYKKIESEKNEALKRQEKLIDHIKTSRLGLEEQKRIKAELSQDVGT 475

Query: 414 SERRANALQNELEESRTLLEQA-----DRARRQAEQEL 512
           S+ R + LQ+EL+  R  L  A     + ARR+ +QE+
Sbjct: 476 SKERIHELQSELDNVREQLGDAKIDKHEDARRKKKQEV 513


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 29.1 bits (62), Expect = 0.16
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 65  GPPCSARTVSGQTGDRQTHPREGGRI 142
           G P    T SG TG RQ HP   GR+
Sbjct: 112 GEPSRRWTRSGATGRRQPHPYRAGRV 137


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 29.1 bits (62), Expect = 0.16
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 65  GPPCSARTVSGQTGDRQTHPREGGRI 142
           G P    T SG TG RQ HP   GR+
Sbjct: 112 GEPSRRWTRSGATGRRQPHPYRAGRV 137


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 28.3 bits (60), Expect = 0.29
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 240 KKLEADINELEIALDHANKANAEAQKNIKRYQAQIKDL 353
           + LEA + E + A D ++      QKN+ RY  QI ++
Sbjct: 853 RALEAKVAECKQAFDSSSTKADAMQKNVDRYTEQINEI 890


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 543,984
Number of Sequences: 2352
Number of extensions: 7654
Number of successful extensions: 29
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82744797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)