Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30868
(683 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain... 31 0.54
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 31 0.71
At2g47070.1 68415.m05881 squamosa promoter-binding protein-like ... 30 1.2
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 30 1.6
At5g22450.1 68418.m02618 expressed protein 29 2.2
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 29 2.2
At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transfera... 29 2.9
At2g25870.1 68415.m03105 haloacid dehalogenase-like hydrolase fa... 29 2.9
At1g07160.1 68414.m00762 protein phosphatase 2C, putative / PP2C... 29 2.9
At4g14600.1 68417.m02246 expressed protein 29 3.8
At3g25250.1 68416.m03154 protein kinase family protein contains ... 28 5.0
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 28 5.0
At5g53440.1 68418.m06641 expressed protein 28 6.6
At1g35330.1 68414.m04379 zinc finger (C3HC4-type RING finger) fa... 28 6.6
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa... 28 6.6
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 28 6.6
At1g54970.1 68414.m06278 proline-rich family protein similar to ... 27 8.8
>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
protein weak similarity to transcription co-repressor
Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 744
Score = 31.5 bits (68), Expect = 0.54
Identities = 18/75 (24%), Positives = 31/75 (41%)
Frame = +1
Query: 178 RRTKPGTRASVLDPVTKQNIPPKPESKLAPLAPYVSPREQTRARVLSTVGQRERAFEADP 357
+ T P + + P + IPPK + A PRE R R++ + ++ E
Sbjct: 587 KATIPPKSSRTISPKANRTIPPKSKKTFPREAKRTIPREANRNRIMPSEAKKTIHPEDKR 646
Query: 358 LGTPRDHMDVLLAQA 402
P DH+ + +A
Sbjct: 647 TTRPVDHLAFFIPKA 661
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 31.1 bits (67), Expect = 0.71
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 60 DASALQVHLQRDAVDAR-GLGEGAVRAAAESRARPGDSLRA-AHQAGHARLR 209
D S ++ +Q VD R GLG + AE +PGD+ R H+ AR R
Sbjct: 1048 DGSGMKEPVQAQGVDRRAGLGSQQKKVDAEFEVQPGDTYRTLLHKKALARFR 1099
>At2g47070.1 68415.m05881 squamosa promoter-binding protein-like 1
(SPL1) identical to squamosa promoter binding
protein-like 1 [Arabidopsis thaliana] GI:5931655;
contains Pfam profile PF03110: SBP domain
Length = 881
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -1
Query: 395 ASSTSMWSRGVPRGSASNARSRCPTV--ERTRARVCSRGDT*GARGANFDSGFGGMF 231
A+ T+ + P G++SN+ S C ++ R V +GDT GA N + G+F
Sbjct: 39 ATQTTRGRQFFPLGNSSNSSSSCSDEGNDKKRRAVAIQGDTNGALTLNLNGESDGLF 95
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/54 (33%), Positives = 21/54 (38%)
Frame = +1
Query: 127 PFVPRPSLVPDPVTAFGRRTKPGTRASVLDPVTKQNIPPKPESKLAPLAPYVSP 288
P P P P P T + P V P K++ P P L P AP SP
Sbjct: 90 PPPPAPKKSPPPPTPKKSPSPPSLTPFVPHPTPKKSPSPPPTPSLPPPAPKKSP 143
>At5g22450.1 68418.m02618 expressed protein
Length = 1180
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 179 RPKAVT-GSGTRLGRGTNGTFSQSPSVDRV 93
RPK + GSG L RGT G S +P++ +V
Sbjct: 22 RPKGIMLGSGNNLSRGTIGLSSDTPNLSQV 51
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +1
Query: 76 RSTYSVTRSTLGDWEKVPFVPRPSLVPDPVTAF---GRRTKPGTRASVLDPVTKQNIPPK 246
RS+ S RS + D +K + S V + V + ++ T A++ DPV +Q+ P
Sbjct: 477 RSSSSCLRSEVKDEKKTDTLDTESCVKELVESSMVGAIESRSSTHATIEDPVCEQSPSPS 536
Query: 247 PESKLAPLAPYVSP 288
P +P +P SP
Sbjct: 537 PSPSPSP-SPSPSP 549
>At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transferase,
putative similar to O-GlcNAc transferase, Homo sapiens
[SP|O15294], Rattus norvegicus [SP|P56558]; contains
Pfam profile PF00515: TPR Domain; identical to cDNA
GI:18139886
Length = 977
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 138 RHERHLLPVPERRPRHAVGGPVGPTRRVEVTLVYHG*CSCYRSGF 4
R + ++ +P +P HA+ P+ P +E++ Y CS S F
Sbjct: 526 RRQINMSVLPSVQPFHAIAYPIDPILALEISRKYAAHCSIIASRF 570
>At2g25870.1 68415.m03105 haloacid dehalogenase-like hydrolase
family protein contains Pfam profiles PF00702: haloacid
dehalogenase-like hydrolase, PF02130: Uncharacterized
protein family UPF0054
Length = 584
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 73 YRSTYSVTRSTLGDWEKVPFVP 138
+R ++ RST+GDW K+P P
Sbjct: 58 FRRSFHALRSTVGDWRKLPKPP 79
>At1g07160.1 68414.m00762 protein phosphatase 2C, putative / PP2C,
putative similar to protein phosphatase 2C GI:2582800
from [Medicago sativa]
Length = 380
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +1
Query: 127 PFVPRPSLVPDPVTAFGRRTKPGTRASVLDPVTKQNIPPKPESKLAPLAPYVSPREQTRA 306
PF R L P FG + PG+ P T +IP P AP++ +PRE++RA
Sbjct: 58 PFCLR-LLKPPAKLGFGSDSGPGSILKRKRPTTL-DIPVAPVGIAAPISNADTPREESRA 115
>At4g14600.1 68417.m02246 expressed protein
Length = 137
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/71 (30%), Positives = 29/71 (40%)
Frame = +3
Query: 111 GLGEGAVRAAAESRARPGDSLRAAHQAGHARLRVGPRHQTKHPAETGVEVGASRALRISA 290
G G AA R+R G S R A + +LR+ P H TG+ G R L+ A
Sbjct: 9 GAGGSLYGGAAPYRSREGLSTRNAAGSEEIQLRIDPMHSDLDDEITGLH-GQVRQLKNIA 67
Query: 291 RTNARACSFYR 323
+ F R
Sbjct: 68 QEIGSEAKFQR 78
>At3g25250.1 68416.m03154 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 421
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 112 DWEKVPFVPRPSLVPDPVTAFGRRTKPGTRASV 210
DWEKV V RP +P P + T T+ V
Sbjct: 333 DWEKVILVSRPPYIPAPDDGGDKGTDVNTKMDV 365
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 57 HDASALQVHLQRDAVDARGLGEGAVRAAAESR 152
HD + H RD + A G G+ A+R +S+
Sbjct: 266 HDRTIYSAHWSRDDIIASGAGDNAIRLFVDSK 297
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 232 NIPPKPESKLAPLAPYVSPREQTRARVLSTVGQRERAFEADPLGTPRDHM 381
+ PP+PES+ +P V PRE+ ++T G+ +R +G + +M
Sbjct: 596 SFPPRPESRSGVSSPRVGPREEDNR--VNTGGRYKRGGVDAMMGRGQSNM 643
>At1g35330.1 68414.m04379 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 327
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 217 PVTKQNIPPKPESKLAPLAPYVSPRE 294
PV + ++PPKP S L P++ P +
Sbjct: 167 PVCRASLPPKPGSDQNSLYPFIRPHD 192
>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245; contains Pfam profile
PF01190: Pollen proteins Ole e I family
Length = 359
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/61 (27%), Positives = 20/61 (32%)
Frame = -3
Query: 228 FGDGVQHGGARARLGAPPEGCHRVGHETRPRHERHLLPVPERRPRHAVGGPVGPTRRVEV 49
F + V H L P H H P H H P P P PV P + V
Sbjct: 23 FTEEVNHKTQTPSLAPAPAPYHHGHHHPHPPHHHH--PHPHPHPHPPAKSPVKPPVKAPV 80
Query: 48 T 46
+
Sbjct: 81 S 81
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = +1
Query: 127 PFVPRPSL-VPDPVTAFGRRTKPGTRASVLDPVTKQNIPPKPESKLAP 267
P P+P P PV G KP + PPKPE+K P
Sbjct: 99 PSPPKPPAPTPKPVPPHGPPPKPAPAPTPAPSPKPAPSPPKPENKTIP 146
>At1g54970.1 68414.m06278 proline-rich family protein similar to
proline-rich protein GI:170048 from [Glycine max]
Length = 335
Score = 27.5 bits (58), Expect = 8.8
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 16 ITRALTMVYESDFYTTRRPYRSTYSVTRSTLGDWEKVPFVPRPSLVPDPVTAFGRRTKPG 195
I +L + +D+Y P T V + TL P V +P+L P PV T P
Sbjct: 12 ILLSLATIATADYYAPSSPPVYTSPVNKPTLPPPVYTPPVHKPTL-PPPV-----YTPPV 65
Query: 196 TRASVLDPV-TKQNIPP 243
+ ++ PV TK +PP
Sbjct: 66 HKPTLSPPVYTKPTLPP 82
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,652,036
Number of Sequences: 28952
Number of extensions: 220868
Number of successful extensions: 1023
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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