Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30866
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2...    30   0.43 
SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni...    28   1.3  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   9.3  

>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
           Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 313 YFKIARHPPCTIYRLR*-PLHNTNKVKN*TTQLRK 414
           Y  +A+HPP   Y  R  PL++ NKVK+   +LRK
Sbjct: 28  YETVAKHPPTFQYARRIVPLYDPNKVKSRGKRLRK 62


>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
           Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 119

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 288 IALVSSLIFKLECGNCAADCAVQWT 214
           ++ + SLIF  ECGN       QWT
Sbjct: 1   MSAIGSLIFCSECGNLLESTTAQWT 25


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +2

Query: 170 CCRHVCGAMSHHRPPVHCTAQSAAQLPHSSLKIRL 274
           C  H C  M H  P   C   S  +LP +  + RL
Sbjct: 595 CGNHFCQHMCHRGPCPRCLEASFEELPCTCGRTRL 629


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,409
Number of Sequences: 5004
Number of extensions: 47864
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)