Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30866
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0631 - 26262247-26262287,26262612-26262686,26262768-262628...    28   7.3  
03_05_0153 + 21299150-21299593,21299733-21299873,21299971-213000...    28   7.3  

>03_05_0631 -
           26262247-26262287,26262612-26262686,26262768-26262843,
           26263115-26263156,26263226-26263334,26263660-26263664
          Length = 115

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 104 RRKTPINS*NECLVEFICYLTRCCRHVCGAMSHH 205
           R  + +N  NEC  E +  L +C +H C  ++++
Sbjct: 62  RASSSLNDYNECKKERVVCLAKCIKHFCCILNYN 95


>03_05_0153 +
           21299150-21299593,21299733-21299873,21299971-21300084,
           21300181-21300354,21300486-21300494
          Length = 293

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 203 HRPPVHCTAQSAAQLPHSSLKIRLDTSA 286
           H PP  C+A S  +L  SS ++RL  +A
Sbjct: 22  HHPPPSCSAPSLLRLTRSSRRLRLRAAA 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,893,927
Number of Sequences: 37544
Number of extensions: 305162
Number of successful extensions: 779
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)