Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30866
         (785 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    27   0.87 
CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.          25   3.5  
AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    24   6.1  

>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 26.6 bits (56), Expect = 0.87
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 344 VHGGCRAILKYTQVRLKSKLHLYLV*SSNW--NAVTARRTARYNGQE 210
           +H G  A++K    +LK  +H  L  ++ W  N   +RRT    GQE
Sbjct: 516 LHAGRNAMVKEFAAKLKHLVHSRLQQANGWVRNTFRSRRTQLGFGQE 562


>CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.
          Length = 295

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
 Frame = +2

Query: 170 CCRHVCGA-------MSHHRPPVHCTAQSAAQLPHSSLKIRL 274
           CCR  CG         S H PP H  A  AA+ P    +I++
Sbjct: 206 CCRKTCGTGWKYRSISSLHAPPSHPGAHRAAE-PRLDWRIKI 246


>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -1

Query: 344 VHGGCRAILKYTQVRLKSKLHLYLV*SSNW--NAVTARRT--ARYNGQE 210
           +H G  A++K    +LK  +H  L  ++ W  N   +RRT   R  GQE
Sbjct: 516 LHTGRNAMVKEFATKLKHLVHSRLQQANGWVRNTFRSRRTQLGRGFGQE 564


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 718,779
Number of Sequences: 2352
Number of extensions: 12904
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82328994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)