Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30865
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                31   1.1  
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)            30   2.0  
SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8)                     29   2.7  
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)                   29   3.5  
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)                  29   3.5  
SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)                 29   4.6  
SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)                    28   6.1  
SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)                    28   6.1  
SB_3330| Best HMM Match : RBM1CTR (HMM E-Value=0.62)                   28   6.1  
SB_49967| Best HMM Match : RBM1CTR (HMM E-Value=1.4)                   28   8.1  

>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 1021

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 100 YNRVYSTVSPFVYKPGR---YVADPGRYDPSRDNSGRYIP 210
           YNR+ +   P++ +PGR   Y   PGR DP     GR  P
Sbjct: 670 YNRLQARDDPYIKQPGRDDPYNKQPGRDDPYIKQPGRDDP 709


>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
          Length = 509

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 536 PKATTTCTRPRTRF--SLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPT 679
           P ATTT T+P T    +   P +  T  P    + ++ +T T   T +PT
Sbjct: 139 PPATTTPTKPTTTTPPATTTPTKPTTTTPPATTTPTKSTTTTPPATTTPT 188


>SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8)
          Length = 541

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +2

Query: 536 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAP 664
           PK T   TRP+TR   +   R +T  PKTK S+S+  T T  P
Sbjct: 270 PK-TRPKTRPKTRPKTRPKTRPKT-RPKTK-SKSKSKTKTATP 309


>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 542 ATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPT 679
           +TTT + P T  + +  + + T AP T   R+  +T T AP+ S T
Sbjct: 75  STTTTSAPSTS-TPRTGSTTTTSAPSTSTPRTGSTTTTSAPSTSTT 119


>SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)
          Length = 516

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +1

Query: 430 SKVVTPTYVASKVVPPSGAGYDYKYGIIRYDNDVAPEGYHYLYETENKILAEEAGKVENV 609
           + ++ P  V +K   P G   DY Y +   D  +A   YH L   E          +E++
Sbjct: 183 ANIIAPISVVNKF--PPGTVVDYAYNVFYQDRKIAHTPYHALTVGERDCYNARRDMLEHL 240

Query: 610 G 612
           G
Sbjct: 241 G 241


>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
          Length = 425

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 456 NVCGCDHLAGNVCGCDWHGNGRL 388
           N  GC+   GN  GC++ G+ R+
Sbjct: 382 NTMGCEFQGGNTMGCEFQGDSRI 404


>SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)
          Length = 420

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 28  VFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKP 144
           VFL   +S+TV + +  GKY P  YN   + ++ F + P
Sbjct: 132 VFLVWGISITVGVLSVVGKYEPLAYN--VTVIALFFFLP 168


>SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 278 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 367
           PVL     +P S PRR S     +LTR PA
Sbjct: 111 PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 140


>SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 465 LAGNVCGCDHLAGNVCGCDWHGNGRLHDGQGNNAGSLVSITKV 337
           L GN CG   L GN CG   +GN       GN +G+   +  V
Sbjct: 238 LYGNKCGTS-LYGNKCGTSLYGNKSGTSLYGNKSGNPPDVVAV 279


>SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)
          Length = 304

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 278 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 367
           PVL     +P S PRR S     +LTR PA
Sbjct: 86  PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 115


>SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)
          Length = 877

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
 Frame = -1

Query: 450 CG-CD---HLAGNVCGCDWHGNGRL-HDGQGN 370
           CG CD     AG V  CDW G+G L  D +GN
Sbjct: 667 CGPCDVAVDSAGRVIACDWSGDGVLVFDSRGN 698


>SB_3330| Best HMM Match : RBM1CTR (HMM E-Value=0.62)
          Length = 546

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +2

Query: 548 TTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTV 670
           T  T  R R+ +  P RS  L P+ +ASRSRD     APT+
Sbjct: 262 TELTERRKRYFVS-PLRSSCLWPRGRASRSRD--GACAPTM 299


>SB_49967| Best HMM Match : RBM1CTR (HMM E-Value=1.4)
          Length = 334

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = +2

Query: 545 TTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE 682
           T +  R ++RF    P RS    P  +ASRSRD     APT+ P E
Sbjct: 262 TESTERRKSRFV--SPLRSSCRWPLGRASRSRD--GACAPTMPPPE 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,989,382
Number of Sequences: 59808
Number of extensions: 329173
Number of successful extensions: 868
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)