Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30864
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    33   0.036
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    29   0.58 
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    29   0.77 
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   4.1  

>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 33.1 bits (72), Expect = 0.036
 Identities = 21/76 (27%), Positives = 37/76 (48%)
 Frame = +1

Query: 361 GTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESDLKGDTSGTLQEIVRVGCAWANRD 540
           G+++  ++  L  L+     T++A      GK L S+ +GD  GT+  ++R    WA++ 
Sbjct: 77  GSEKGELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDVDGTI-ALLRYCAGWADKI 135

Query: 541 ENQGIDEGSAKGRWLK 588
             Q I  G  K  + K
Sbjct: 136 YGQVIPTGPEKLAYAK 151


>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 343 DAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESDLKGDTSGT 495
           DA++ +   +E I E   T  +Y IRT+S  Y+  Y  S   D   D + T
Sbjct: 215 DAITSLWDPQELICERSITRMDYPIRTLSFSYDSRYLASGSEDRYVDIADT 265


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 535 DWPMHNRHAQSLEVSPTCRLLSPIPGSCRTVVRKMRIW 422
           DWP H    ++L+ S    +L   P  CR ++R   +W
Sbjct: 79  DWPFHKLECKALQASKQNGIL---PSVCRLLIRLYLLW 113


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 432  ILRTTVRQEPGIGLKRRHVGD 494
            ++ T +  +PG  LK+RH+G+
Sbjct: 1171 MMPTNIEHDPGCTLKKRHIGN 1191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,405,193
Number of Sequences: 5004
Number of extensions: 46333
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)