Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30859
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   2.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.5  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   3.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.1  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 18/65 (27%), Positives = 23/65 (35%)
 Frame = +1

Query: 121 ACSHQLASMARSSSMTEPPQSSKERSVLRRTRAAFTASRGRRTVNSYCPVRETRPARYGI 300
           +CS       R     E   + KE+ +  RT     +    R  NSY   RE R  R   
Sbjct: 3   SCSRDRNREYRKDRRYEKLHNEKEKLLEERTNRKRNSRSREREQNSYKNEREYRKYRETS 62

Query: 301 SRRCR 315
             R R
Sbjct: 63  KERSR 67


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 18/65 (27%), Positives = 23/65 (35%)
 Frame = +1

Query: 121 ACSHQLASMARSSSMTEPPQSSKERSVLRRTRAAFTASRGRRTVNSYCPVRETRPARYGI 300
           +CS       R     E   + KE+ +  RT     +    R  NSY   RE R  R   
Sbjct: 3   SCSRDRNREYRKDRRYEKLHNEKEKLLEERTNRKRNSRSREREQNSYKNEREYRKYRETS 62

Query: 301 SRRCR 315
             R R
Sbjct: 63  KERSR 67


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -1

Query: 440  RVVDIQVIDHPGQGHGYEMLP 378
            + +  Q   HPG GH   M P
Sbjct: 1741 KAMQFQTFPHPGNGHSGTMGP 1761


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 200 FSGAQGRR-LRHLVVAGR*TVTVLFGRQDLRDMG 298
           F G +G+R    +  +   TV  +FG QD+R+ G
Sbjct: 259 FHGMRGKRDAAGIYGSNSSTVGTIFGYQDMRNRG 292


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 153 IFLYDGATSELKGEIGSPAHKGGV 224
           +F+ +G T  +  EIG   H G V
Sbjct: 867 LFVLNGETRTINCEIGGLQHPGAV 890


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,688
Number of Sequences: 438
Number of extensions: 4145
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)