Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30858
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 33 0.039
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 29 0.48
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 29 0.63
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.83
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.1
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 28 1.5
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 1.9
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 2.5
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 27 3.4
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 27 3.4
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 26 4.4
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.4
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 26 5.9
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 25 7.8
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 33.1 bits (72), Expect = 0.039
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Frame = +2
Query: 314 MKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRI 493
+K W + S A+Q S T A R P Q D+W ++ P + I
Sbjct: 124 LKENIREWSSKFMNSKASQKQQMLSPETMQKVDLAGRASPRYQANDSWISKKRNAPLSSI 183
Query: 494 AKY-TASDAYASTTLISAVV-RNTTTFKSSITERAEKCLTA 610
++Y + YA T S + N T FK++ + + L A
Sbjct: 184 SQYANMPENYALNTKKSKISNENDTIFKANFQQNKYESLHA 224
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 29.5 bits (63), Expect = 0.48
Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Frame = +2
Query: 275 ELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVT--ASRTVPTRQTP 448
E+TT + M+ + T + + + +T ++ + + ET + A+ T P +T
Sbjct: 42 EITTMTIP--MEEITTMTTPMEEITTITTPMEETTTITPMVETTTILPMAAMTTPMVETT 99
Query: 449 DAWCAQTSTKPGNRIAKYTASDAYASTTLISAVVRNTTTFKSSITERAEKCLTALKARCL 628
+T+T P + T + +TT+ V T + ++T E+ T L +
Sbjct: 100 TIPTVETTTTP--MVETTTITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMAAM 157
Query: 629 TSPV 640
T+P+
Sbjct: 158 TTPM 161
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 29.1 bits (62), Expect = 0.63
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -3
Query: 566 TWWYCGP--RH*SELSRHKHRWRYTSQSD 486
T+WY P RH E + H W Y+S D
Sbjct: 44 TYWYPPPPPRHHKEHKKSHHHWEYSSDDD 72
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.7 bits (61), Expect = 0.83
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Frame = +2
Query: 272 PELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPD 451
P T +RS T ++ ++T+ Q S + N+ TP +T+S +V TP
Sbjct: 339 PAANTIISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNSSTP-ITSS-SVLNSSTP- 395
Query: 452 AWCAQTSTKPGNRIAKYTASDAYASTTLI--SAVVRNTTTFKSSITERAEKCLTALKARC 625
TS+ N T+S S+T I S+++ ++T SS + +T+ A
Sbjct: 396 ----ITSSSILNTSTPITSSSVLNSSTPITSSSILNSSTPITSSTVLNSSTPITSSTALN 451
Query: 626 LTSPV 640
++P+
Sbjct: 452 TSTPI 456
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/100 (20%), Positives = 41/100 (41%)
Frame = +2
Query: 356 STAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTL 535
+++A S ST + S +PT + T T+P ++ + ++ +
Sbjct: 735 NSSAYPSSGSSTFSRLSSTLTSSIIPTETFGSTSGSATGTRPTGSSSQGSVVPTTSTGSS 794
Query: 536 ISAVVRNTTTFKSSITERAEKCLTALKARCLTSPVACGTG 655
+++ TTT + +TE + T + + A GTG
Sbjct: 795 VTSTGTGTTTGVTEVTETSTFETTEIITSTIEPTTASGTG 834
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = -2
Query: 582 VILDLNVVVLRTTALIRVVEA*ASLAVYFAIRLPGFVEVCAHHASGVCLVGTVLDAVTHG 403
++ LN+ V + +++++E A + I PG +E+ ASG + T+ +
Sbjct: 80 IMTSLNLFVTKFDQVLKILEKRAPTVDHILIDTPGQIEIFQWSASGSIICDTLASSWPTC 139
Query: 402 VSVFVD 385
++ VD
Sbjct: 140 IAYVVD 145
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 27.5 bits (58), Expect = 1.9
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +1
Query: 361 CSAGRVCEINEHGDAMCNCIKDC 429
C+A R+C++ E C+ DC
Sbjct: 974 CTASRICKVREIASLSLTCLLDC 996
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 362 AAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTT 532
A+ VSA + TP V+++ + + TS + I+ T+S A AS T
Sbjct: 233 ASASVSAANKGVSTPAVSSAAASSSAVVSSVVSSATSVAASSTISSATSSSASASPT 289
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/80 (23%), Positives = 39/80 (48%)
Frame = -2
Query: 393 FVDFADTSCAAVDFQARVFHVDFFVFILFIRDLVEKVVNSGYFCLMVSLLVQALRHSVLD 214
++ F + + V+ RV+ VD + + + + + + L +SLL+ A + +
Sbjct: 354 WISFDEFVTSDVEGSLRVYKVDGKAPVSTVSHAHDNSIVALRYNLRISLLLTASSDTTVK 413
Query: 213 VFSLRDVPAAELLRRWTFSS 154
++S D A E L ++FSS
Sbjct: 414 LWSRGDAGAFECLHVFSFSS 433
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 533 LISAVVRNTTTFKSSITERAEKCLTALKARCLTSPV 640
LI + +N T F + E+ CL LK + + SP+
Sbjct: 82 LIELLQKNHTIFPFELCEKIVLCLVLLKNKTVISPI 117
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 267 FCLMVSLLVQALRHSVLDVFSLRD 196
FCL ++ ++ LR+SV V +LRD
Sbjct: 449 FCLRINPMLDGLRNSVATVDALRD 472
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +2
Query: 377 SAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISAVVRN 556
S S+++ + T+ + P+ + TS+ G + TASD AS +IS+ N
Sbjct: 53 STSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTSVI--TASDVSASNEIISSSTNN 110
Query: 557 T 559
+
Sbjct: 111 S 111
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 4.4
Identities = 28/134 (20%), Positives = 57/134 (42%)
Frame = +2
Query: 209 NTSSTECLRAWTRSDTMRQK*PELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKS 388
+TSS+ +W + + T ST S+ + ST T ST+ S+ +
Sbjct: 609 STSSSSTQVSWNSTTPITGTSTSKVTSST-SIPLTSTNRTSTTFT---SSTSISTSSSST 664
Query: 389 TNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISAVVRNTTTF 568
+ T + S + + T + + ST P T + ++ +++ +S++ N+T
Sbjct: 665 ATSSTSFASESSSFYSNVTTSS--STVSTPPPTTSFPSTFTTSFITSSSLSSIPNNSTEV 722
Query: 569 KSSITERAEKCLTA 610
K++ T + TA
Sbjct: 723 KTASTSSGTEIKTA 736
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = +2
Query: 410 VTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISAVVR 553
V + +P + ++W S +P R Y STT ++ VR
Sbjct: 206 VVTQKQIPNKMDMESWVKYMSLEPSKRGRIYDVLSLEVSTTKLAYYVR 253
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 441 CLVGTVLDAVTHGVSVFVDFADT-SC 367
CL+ + LD +T G+S F++ D SC
Sbjct: 265 CLITSHLDTLTKGISQFIEKRDAHSC 290
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,566
Number of Sequences: 5004
Number of extensions: 48428
Number of successful extensions: 154
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -