Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30856
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    28   1.6  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.1  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    27   2.8  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    27   3.7  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    27   3.7  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    26   4.9  
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    26   4.9  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   6.4  

>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +1

Query: 382 KQMMYRNPLLYEQLVGQYLTDEEIK-ERDRITENVSFLNLILETVDHNHMREVKNVQMLE 558
           KQ   RN  +++ L+       +++ E DRI    S L +    VD      ++ ++ L+
Sbjct: 177 KQNEERNEEMFQSLIEDKRLCSQVRTEYDRIRMEASELKIRYHNVDSLMASTLEEIEKLQ 236

Query: 559 EGIHETPEASEFSLNDST 612
             I  +PE  +  + D++
Sbjct: 237 SSIVHSPEKLKGKIADTS 254


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +1

Query: 478 NVSFLNLILETVDHNHMREVKNVQM-LEEGIHETPE 582
           +V+ + +I ET+DH H +E+K+  +  E  ++E  E
Sbjct: 199 SVTAIPIITETLDHAHEQEIKDQSLRFESSLNEANE 234


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 355 SFFVMPYIFCSLSSCVCLFPNDSHSNSAR 269
           SFF++   F    SC+CLF    H++S R
Sbjct: 107 SFFLVYLTFAVSVSCLCLFYIKGHASSIR 135


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 630 KIYVFICTIIQRKFRSFWCFMNTFFK 553
           +++ F   + + K  +FWC +NT FK
Sbjct: 281 RVFPFARGLWEDKVANFWCTLNTVFK 306


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 346 VMPYIFCSLSSCVCLFPNDSHSNSARNS*MFDLWS*RY 233
           V P  FC+L  C   F N  H +  ++    + WS +Y
Sbjct: 436 VSPSNFCALEVCALQFVNGVHKSVVKHLDEKETWSIKY 473


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 58  DYLVRSANISFKNSHANEQPVRTCEKLQMALEI 156
           D+LV +  +S  N H  E   RTC++ ++ L I
Sbjct: 86  DFLVDAVFVSESNHHEKEILHRTCKRYRIPLNI 118


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +1

Query: 130 EKLQMALEIYKRSPVEFLMQFGK--YLAPNHIKYFENISSSKD 252
           EK     +++    V + M  GK  + APNH++    I  +KD
Sbjct: 224 EKYDAKADLWSVGAVLYEMAVGKPPFKAPNHVELLRRIQKAKD 266


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 478  NVSFLNLILETVDHNHMREVKNVQMLEEGIHETPEASEFSLN 603
            N SF++   E  DH     VK++++     H +PE  +  LN
Sbjct: 1169 NASFVSCWSELYDHFQEELVKSIEIALTSPHISPEIIQILLN 1210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,749
Number of Sequences: 5004
Number of extensions: 58118
Number of successful extensions: 187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)