Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30856
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37070| Best HMM Match : Vicilin_N (HMM E-Value=4.8)                 89   5e-18
SB_33752| Best HMM Match : I-set (HMM E-Value=3.7e-15)                 30   1.7  
SB_58895| Best HMM Match : SRCR (HMM E-Value=0)                        29   5.2  

>SB_37070| Best HMM Match : Vicilin_N (HMM E-Value=4.8)
          Length = 319

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 57/191 (29%), Positives = 99/191 (51%), Gaps = 9/191 (4%)
 Frame = +1

Query: 73  SANISFKNSHANEQPVRTCEKLQMALEIYKRSPVEFLMQFGKYLAPNHIKYFENISSSKD 252
           ++ ++ K+   +E  + + +K+++  EI K +P  FLM+FG+ L    ++YFE++   K 
Sbjct: 24  NSGVTIKSQQRDEPDLSSEQKIKILEEIKKTNPASFLMRFGQSLVTKDLEYFESLY--KQ 81

Query: 253 QTFRNY-----VHYLSDYHSETSXXXXXXXXXYKALQKMKIKTDYFSEKQMMYRNPLLYE 417
            T  NY     +  +  +  +           Y+A+Q++   + +FSE++M  RNPLLYE
Sbjct: 82  NTLTNYEIGFRLKEIKKHLDQQKHHVEVQNRRYEAMQRLINDSTFFSEEEMRKRNPLLYE 141

Query: 418 QLVGQYLTDEEIKERDRITE---NVSFLNLILETVDHNHMREVKNVQMLEE-GIHETPEA 585
           Q +GQYLT+EE  ERD I E     S   L+    D    + + N Q  +E  + E  E 
Sbjct: 142 QYIGQYLTEEEKLERD-IAEREGEPSLSQLMFSKYDAEKTQWIYNYQREQEREMEEEEED 200

Query: 586 SEFSLNDSTNE 618
           SE  + + + +
Sbjct: 201 SEEEMEEDSQD 211


>SB_33752| Best HMM Match : I-set (HMM E-Value=3.7e-15)
          Length = 783

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/70 (22%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
 Frame = +1

Query: 445 EEIKERDRITENVS--FLNLILETVDHNHMREVKNVQMLEEGIHETPEASEFSLNDSTNE 618
           E + + D +TE  +  +++ +L+ ++H H + V ++ + ++      ++SE ++  +TN+
Sbjct: 146 ERVVDEDCLTEKEAAYYMHQLLQGIEHVHKKNVLHLDLKKQ------QSSESTVKINTNK 199

Query: 619 NINFQHKRKW 648
              F  KR+W
Sbjct: 200 LKQFLAKRRW 209


>SB_58895| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1838

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +1

Query: 415 EQLVGQYLTDEEIKERDRITENVSFLNLILETVDHNHMRE--VKNVQMLEEGIHETPEAS 588
           + +  Q +T+E +  +    E ++   +  E + +  M E  +KN QM EE  ++     
Sbjct: 158 QPMTNQPMTEESMTNQPMTEEAMTSQLITEEAMTNQPMTEEAMKNEQMTEEATNQPMTGE 217

Query: 589 EFSLNDSTNENINFQHKRK 645
             ++   T E +  QH  K
Sbjct: 218 AMTIQPMTGEAMTNQHMTK 236


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,004,719
Number of Sequences: 59808
Number of extensions: 374761
Number of successful extensions: 856
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)