Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30856
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47090.1 68418.m05806 expressed protein                             35   0.065
At5g58460.1 68418.m07321 cation/hydrogen exchanger, putative (CH...    32   0.46 
At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT...    29   3.2  
At4g16155.1 68417.m02451 dihydrolipoamide dehydrogenase 2, plast...    29   4.3  
At1g73230.1 68414.m08475 nascent polypeptide-associated complex ...    28   7.4  
At1g17880.1 68414.m02212 nascent polypeptide-associated complex ...    28   7.4  
At5g52030.2 68418.m06456 TraB protein-related                          27   9.8  
At1g01590.1 68414.m00076 ferric-chelate reductase, putative simi...    27   9.8  

>At5g47090.1 68418.m05806 expressed protein
          Length = 310

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
 Frame = +1

Query: 130 EKLQMALEIYKRSPVEFLMQFGKYLAPNHIKYFENISSSK--DQTFRNYVHYLSDYHSET 303
           ++  + L++ +R P  FL ++G  L  + +  F+ +      D   +N    +S    E 
Sbjct: 48  QRKSILLDLLRRDPAVFLERYGSELLVDELLEFDAMKHDYEVDWHLKNLRKKISPTSEEI 107

Query: 304 SXXXXXXXXXYKA-LQKMKIKTDYFSEKQMMYRNPLLYEQLVGQY 435
                       A L K+  +  YFSE  M  R P L+ + VG++
Sbjct: 108 KSRSVAVRNRRLAYLNKLVSEGQYFSEDAMRDREPYLHHEYVGKF 152


>At5g58460.1 68418.m07321 cation/hydrogen exchanger, putative
           (CHX25) similar to Na+/H+-exchanging protein slr1595,
           Synechocystis sp., PIR:S74951; monovalent cation:proton
           antiporter family 2 (CPA2) member, PMID:11500563
          Length = 857

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = +1

Query: 382 KQMMYRNPLLYEQLVGQYLTDEEIKERDRITENVSFLNL-ILETVDHNHMREVKNVQMLE 558
           +Q MYR  +L+   +G     E +   DR+TEN  F+NL ++  + HNH  E +  + L+
Sbjct: 679 RQEMYRFVVLF---LGGADNREALHLADRMTEN-PFINLTVIRFLAHNHEGEDEREKKLD 734

Query: 559 EGI 567
           +G+
Sbjct: 735 DGV 737


>At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT1)
           identical to homeobox protein knotted-1 like 1  (KNAT1)
           SP:P46639 from [Arabidopsis thaliana]
          Length = 398

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +1

Query: 535 VKNVQMLEEGIHETPEASEFSLNDSTNENINFQHKRKWG*IHYPRYET*LYSRKQKQRVI 714
           + +  ML   IH T EA     N++ N+N++     K   I +P Y T L +    Q++ 
Sbjct: 104 INHYSMLMRAIHNTQEA-----NNNNNDNVSDVEAMKAKIIAHPHYSTLLQAYLDCQKIG 158

Query: 715 SAPE 726
           + P+
Sbjct: 159 APPD 162


>At4g16155.1 68417.m02451 dihydrolipoamide dehydrogenase 2,
           plastidic / lipoamide dehydrogenase 2 (PTLPD2) identical
           to plastidic lipoamide dehydrogenase from Arabidopsis
           thaliana [gi:7159284]
          Length = 567

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 172 VEFLMQFGKYLAPNHIKYFENISSSKD 252
           V+ L  FG  L P  +KY +NI + KD
Sbjct: 190 VDILTGFGAVLGPQKVKYGDNIITGKD 216


>At1g73230.1 68414.m08475 nascent polypeptide-associated complex
           (NAC) domain-containing protein similar to SP|P20290
           Transcription factor BTF3 (RNA polymerase B
           transcription factor 3) {Homo sapiens}; contains Pfam
           profile PF01849: NAC domain
          Length = 165

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 630 STQKKMGVNSLPQIRNLTIFQ 692
           ST K++GVNS+P I  + IF+
Sbjct: 41  STLKRVGVNSIPAIEEVNIFK 61


>At1g17880.1 68414.m02212 nascent polypeptide-associated complex
           (NAC) domain-containing protein / BTF3b-like
           transcription factor, putative similar to SP|P20290
           Transcription factor BTF3 (RNA polymerase B
           transcription factor 3) {Homo sapiens}; contains Pfam
           profile PF01849: NAC domain; identical to cDNA
           BTF3b-like factor GI:5912423
          Length = 165

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 630 STQKKMGVNSLPQIRNLTIFQ 692
           ST K++GVNS+P I  + IF+
Sbjct: 41  STLKRIGVNSIPAIEEVNIFK 61


>At5g52030.2 68418.m06456 TraB protein-related
          Length = 402

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/69 (27%), Positives = 39/69 (56%)
 Frame = +1

Query: 61  YLVRSANISFKNSHANEQPVRTCEKLQMALEIYKRSPVEFLMQFGKYLAPNHIKYFENIS 240
           +LV +++IS +++   E+ VRT +   +A+E+ +   V+F +Q  K+ A   I Y  ++ 
Sbjct: 95  WLVGTSHISPESASIVERVVRTVKPDNVAVELCRSRKVQFFIQ-TKFGA--GIMYTSSVG 151

Query: 241 SSKDQTFRN 267
              DQ  ++
Sbjct: 152 GEVDQNLKS 160


>At1g01590.1 68414.m00076 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile: PF01794 ferric
           reductase like transmembrane component
          Length = 704

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = -3

Query: 682 VRFRIWGSEFTPIFFCVENLCFHLYYHSKK--IQKLLVFHEYLLQAFAHSSPLSCG 521
           +++ IW      I F    LC+ +Y+ SK   + K+L +    +   A    L  G
Sbjct: 206 IKYHIWLGHLVMIIFTSHGLCYFIYWISKNQLVSKMLEWDRTAVSNLAGEIALVAG 261


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,331,517
Number of Sequences: 28952
Number of extensions: 275647
Number of successful extensions: 689
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)