Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30854
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    31   0.034
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    30   0.10 
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    26   1.7  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   3.0  
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    25   3.0  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    25   3.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   3.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   3.9  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    24   5.2  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    24   5.2  
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch...    24   5.2  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    24   6.8  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    24   6.8  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    24   6.8  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    24   6.8  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    23   9.0  

>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 31.5 bits (68), Expect = 0.034
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
 Frame = +3

Query: 6   LQEDGLPDAATEL--SAPVATKVFTAPTSKRP---APTPKPMKQ---SDAKPKGKQTTFV 161
           ++E  +PD   E   SAP +TK   AP +K P   +P PKP K      +KPK  +T   
Sbjct: 156 IEEKPMPDLGAEQKESAPSSTK--PAPDAKEPEFSSPKPKPAKSEPVKQSKPKATETARP 213

Query: 162 NSL--HEEHIQQSNSFKRL 212
           +S   +E+ ++ +    R+
Sbjct: 214 SSFSRNEDRVKMNRMRLRI 232


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 29.9 bits (64), Expect = 0.10
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 15  DGLPDAATELSAPVATKVFTAPTSKRPAPTP-KPMKQSDAKPKGKQ-TTFVNSLHEEHIQ 188
           D +  +A+  +A     V T+P S    P P +P +Q     K    TTFV+S+H   +Q
Sbjct: 169 DSVSTSASSSNASNTVSV-TSPASSSATPLPNQPSQQQFLVSKNDAFTTFVHSVHNTPMQ 227

Query: 189 QS 194
           QS
Sbjct: 228 QS 229


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 69  FTAPTSKRPAPTPKPMKQSDAKPKGKQTTFVNSLHEEHIQQSNS 200
           F  PTSK   P P    +S +  + +  + +N L  E+   SNS
Sbjct: 308 FRHPTSKPLPPKPLSRSKSSSLSRNQTRSQLNDLSAENDSTSNS 351


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 19/74 (25%), Positives = 29/74 (39%)
 Frame = +3

Query: 21  LPDAATELSAPVATKVFTAPTSKRPAPTPKPMKQSDAKPKGKQTTFVNSLHEEHIQQSNS 200
           +P  A +   P A  V  +    RP P P P   +   P    T+  N   E ++  + S
Sbjct: 52  VPQVAQKAFDPQAATVSESANVSRPTPAPVPPAGNTNTP---TTSNSNQNLENNVTSAAS 108

Query: 201 FKRLMFNVLGDTEF 242
              ++ N  G  EF
Sbjct: 109 MPAIL-NAAGQLEF 121


>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 9   QEDGLPDAATELSAPVATKVFTAPTSKRPAPTPKPMKQSDAKPK 140
           Q+D   DA+T  S+PV  +V   P    P    + + Q+  +PK
Sbjct: 202 QDDSAADASTTKSSPVHNEVMAEPL---PHSNNREVTQATNQPK 242


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 181 TFNSRIHSNASCSMYLGTPNSKDATRDLLQR 273
           TF++ ++S+ S   Y G PN     + L++R
Sbjct: 390 TFSNILYSDVSFPEYHGAPNVSSTCKSLIRR 420


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 13/57 (22%), Positives = 24/57 (42%)
 Frame = +3

Query: 42   LSAPVATKVFTAPTSKRPAPTPKPMKQSDAKPKGKQTTFVNSLHEEHIQQSNSFKRL 212
            +SA ++T     PT + P PT +    +   P    T+F  +   +     N F ++
Sbjct: 1295 VSASISTPPAVVPTVQHPQPTKQIPTAAVKDPSTTSTSFNTAPIPQQAPLENQFSKM 1351


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 75  APTSKRPAPTPKPMKQSDAKP 137
           A   KRP P P P +++  KP
Sbjct: 305 AANKKRPPPPPPPSRRNRGKP 325


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 99  PTPKPMKQSDAKPKGKQTTFVNSLHEEHIQQSNSFKRLMFNVL 227
           P PK MK    +  G  T    SLH  +I + N  KR  ++ L
Sbjct: 294 PLPKWMKTLSPQRIGFLTPADKSLHSRYIAEMNVGKRWQWSDL 336


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 87  KRPAPTPKPMKQSDAKP 137
           K PAP  KP K S +KP
Sbjct: 446 KAPAPENKPEKSSTSKP 462


>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 368

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +3

Query: 66  VFTAPTSKRPAPTPKPMKQSDAKPKGKQTTFVNSLHEEHIQQSNSF 203
           ++T P        P+P K +    +G    F +++ EE ++++N F
Sbjct: 294 LWTVPLDADVKALPEPTKITVPTVQGNYRDFYDAVFEEILKKANEF 339


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +3

Query: 15  DGLPDAATEL-SAPVATKV-FTAPTSKRPAPTPKPMKQSDAKPKGKQTTFVNSLHEEHIQ 188
           +G+P    EL +    +++  +  TS   +P P   +++  KP   Q TFV+     H +
Sbjct: 431 NGIPVDVNELLNVEFISQIPMSTETSSSSSPQPTEERKAKFKPSFTQGTFVSKRMRMHAE 490


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +3

Query: 81  TSKRPAPTPKPMKQSDAKPKGKQTTFVNSLHEEHIQQSNSFKRLM 215
           T   P P P P  ++      +Q    N   E+ +Q+SN    L+
Sbjct: 613 TILEPTPAPLPPPRTTPYQNAEQKLKANKHVEKRVQESNELLDLI 657


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 187 NSRIHSNASCSMYLGTPNSKDATRDL-LQRTNDC 285
           N ++H +  C+  LG PN+KD++  + L +++ C
Sbjct: 166 NFKLHCSF-CNAELGLPNNKDSSNGVRLDKSSIC 198


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 235 PNSKDATRDLLQRTNDCSMFLI 300
           P+S+D T ++ ++ +  SMFLI
Sbjct: 431 PHSRDITENMQRKFSSMSMFLI 452


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
          Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 6  LQEDGLPDAATELSAPVATKVFTAP 80
          L E+G+PD+A  +   V+ K  T P
Sbjct: 11 LHENGVPDSAQPMELDVSKKEDTEP 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,085,404
Number of Sequences: 5004
Number of extensions: 19515
Number of successful extensions: 92
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)