Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30853
(787 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 78 1e-15
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 65 9e-12
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 38 0.001
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 27 4.0
SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.3
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.3
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po... 26 5.3
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 26 7.0
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 26 7.0
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 26 7.0
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 25 9.3
>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
Stg1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 78.2 bits (184), Expect = 1e-15
Identities = 55/146 (37%), Positives = 77/146 (52%), Gaps = 4/146 (2%)
Frame = +1
Query: 82 EQEVLTWISDVLGEPLPNGAYE--DVLRDGVILCKLANKLAPGSVKKIQERGTNFQLMEN 255
E+E WI + L L N + D L+ GVILC++ K A G+ + +E F MEN
Sbjct: 6 EKEAREWIEETLHTKL-NAQLDLLDQLQSGVILCRIC-KEALGANIRYKESNMPFVQMEN 63
Query: 256 IQRF-QAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQKHPEFTGPQLGPKM 432
I F A + VP +++FQT+DLFERRN QV +++ R K LGPK+
Sbjct: 64 ISAFINYAQQVVHVPSQDMFQTSDLFERRNDEQVLRSIHSFSRYAAKMFPGKVRGLGPKL 123
Query: 433 ADKNERTFTEEQLRAHNAELN-LQMG 507
A+K R F+ +Q R +N LQ G
Sbjct: 124 AEKKPRVFSAQQQREFREGVNSLQYG 149
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 65.3 bits (152), Expect = 9e-12
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Frame = +1
Query: 88 EVLTWISDVLGEPL-PNGAYEDVLRDGVILCKLANKLAPGSVKKI-QERGTNFQLMENIQ 261
E WI + LG L P +E LR+GV+L L K P + KI F+ +NI
Sbjct: 46 EAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNIN 105
Query: 262 RFQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYAL 375
+F I G+PE F+ D++E +N+P+V C++AL
Sbjct: 106 KFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHAL 143
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 38.3 bits (85), Expect = 0.001
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Frame = +1
Query: 88 EVLTWISDVLGEPLPN-GAYEDVLRDGVILCKLANKLAPGSVKKIQERGTNFQLMEN--- 255
E W+ + N + D L +G +LC+LA K P + R +Q+ E
Sbjct: 69 EAKKWLEEETNNEYQNLDDFVDALVNGKVLCQLAFKYYPKLASNWKPR---YQISERNTV 125
Query: 256 -IQRFQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYAL 375
+ F + G+ F+T DL R NIP+V CL+AL
Sbjct: 126 YLNAFFHFLDFIGMFTPFRFETKDLVRRFNIPKVIYCLHAL 166
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 251 SMSWKLVPLSWIFFTDPGANLLANLQRITPSLSTSSYAPFG 129
S+++KL + DP LAN +++ SLS +Y P G
Sbjct: 33 SLAYKLYSMLRSLKLDPHFMELANPKKVDSSLSYENYQPIG 73
>SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 163
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 168 DPLQIGQQISSWISEKNPRERNQLPAHG 251
D LQ+ ++ SWI+EK E +L + G
Sbjct: 11 DSLQVDEKAKSWIAEKVEEELRRLESVG 38
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 620 FTNTDINVENIGKNLEAIY 564
F N VEN+GK++EA+Y
Sbjct: 1855 FDNYSEKVENLGKSIEALY 1873
>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 452
Score = 26.2 bits (55), Expect = 5.3
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = -3
Query: 236 LVPLSWIFFTDPGANLLANLQRITPSLSTSSYAPFGSGSPKTSEIQVRTSCSWSLFLAGI 57
L+ ++W +P + +Q++ PS+ T A P E + FL GI
Sbjct: 257 LMHMAWALLDNPNLFVEPYVQQLMPSILTCLVAKRLGSDPNNHEHYALRDL--AAFLLGI 314
Query: 56 VCRR 45
VC R
Sbjct: 315 VCDR 318
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 188 LANLQRITPSLSTSSYAPFGSGSPKTSEIQ 99
L+N +TPS S S Y P +T +Q
Sbjct: 689 LSNFNSVTPSSSASLYPPLIPSEARTPSVQ 718
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +1
Query: 391 KHPEFTGPQLGPKMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGF 546
+ F G G + + + R R N G++ G S SG+GGF
Sbjct: 565 RESSFGGNGRGGRYSGRGGRGGNAYGARDFRRPTNSSSGYSSGPSYSGYGGF 616
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 500 KWASIRAPPSPVMVASVTPATCKLLLNFSQYF 595
++ IR+PP+ V + S+TP NF Q +
Sbjct: 46 RYTKIRSPPTRVSIESITPKQRFPAPNFEQAY 77
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.4 bits (53), Expect = 9.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 362 HNVTWGMLRLSKRSAVWN 309
HN WG R + +A+WN
Sbjct: 491 HNFVWGRFRELEHAAMWN 508
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,602,364
Number of Sequences: 5004
Number of extensions: 83306
Number of successful extensions: 259
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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