Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30852
         (495 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family...    29   1.3  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    29   2.3  
At3g03950.2 68416.m00414 expressed protein contains Pfam profile...    28   3.0  
At3g03950.1 68416.m00413 expressed protein contains Pfam profile...    28   3.0  
At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family pr...    28   3.0  
At5g03890.1 68418.m00365 hypothetical protein                          27   5.3  
At1g12970.1 68414.m01506 leucine-rich repeat family protein            27   5.3  
At3g05430.1 68416.m00595 PWWP domain-containing protein contains...    27   6.9  
At5g62270.1 68418.m07818 expressed protein                             27   9.2  
At3g04610.1 68416.m00493 KH domain-containing protein similar pu...    27   9.2  
At1g52325.1 68414.m05906 hypothetical protein                          27   9.2  
At1g17130.1 68414.m02087 cell cycle control protein-related cont...    27   9.2  

>At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family
           protein contains proline-rich domains,
           INTERPRO:IPR000694
          Length = 310

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 96  LAVPHHSSRAPGS*GPKGAW--PHRELPASSPQPSNEGTS*P 215
           +A P  +S  P    P  A   PH++ P S PQP+N  +  P
Sbjct: 1   MATPSPTSSPPSDSNPNSAATPPHQKQPPSPPQPTNPSSPPP 42


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +1

Query: 46  PNGYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPP 210
           P+    P+ P+E    N PY  +P+     K RR P P   +    P+P    PP
Sbjct: 463 PSPVHKPQPPKESPQPNDPYDQSPV-----KFRRSPPPPPVHSPPPPSPIHSPPP 512


>At3g03950.2 68416.m00414 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 424

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 235 MKQKVAESVLQRVVGEEAPKVLHKQFNSPINLYSEQNIANSIR 363
           MKQ V+   LQR  GE  P+   K     I  YSE ++ N I+
Sbjct: 217 MKQDVSAVDLQRYNGENFPESFVKAKFFVIKSYSEDDVHNCIK 259


>At3g03950.1 68416.m00413 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 425

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 235 MKQKVAESVLQRVVGEEAPKVLHKQFNSPINLYSEQNIANSIR 363
           MKQ V+   LQR  GE  P+   K     I  YSE ++ N I+
Sbjct: 218 MKQDVSAVDLQRYNGENFPESFVKAKFFVIKSYSEDDVHNCIK 260


>At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 654

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 248 WQSRCCSEWLAKRHLRCCTSNSTLQS-IYTRNRTLQTL 358
           ++  C  +WL   HL C  +  TL S I T N  L++L
Sbjct: 281 YERECIKKWLEGGHLTCPKTQETLTSDIMTPNYVLRSL 318


>At5g03890.1 68418.m00365 hypothetical protein
          Length = 179

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 327 IDWRVELLVQHLRCLFANHSLQHRLCHLL 241
           +++R  + V H+   F+ HS+ H   HLL
Sbjct: 22  LEYREPISVHHILTQFSGHSISHNNTHLL 50


>At1g12970.1 68414.m01506 leucine-rich repeat family protein
          Length = 464

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 157 PTESYLRHHPNPAMRAPPN 213
           P  SY+ HH +PA  APP+
Sbjct: 9   PLLSYVLHHSDPASHAPPS 27


>At3g05430.1 68416.m00595 PWWP domain-containing protein contains
           Pfam profile:PF00855 PWWP domain
          Length = 965

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 320 QSIYTRNRTLQTLSGSKLRLCQLTAITDGRTLSRGKSFTKNAPMQQST 463
           +S+Y   +T + L+ + LR+    ++    TL   KS+TK   ++ ST
Sbjct: 327 RSVYCLMKTHEPLNRAPLRVPLSGSLVSAETLGNPKSYTKAMNVKDST 374


>At5g62270.1 68418.m07818 expressed protein
          Length = 383

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +3

Query: 78  RRSCQQLAVPHHSSRAPGS*GPKGAWPHRELPASSPQPSNE 200
           RRS +   +      A G  G  G W    LP  S +P NE
Sbjct: 326 RRSSEGWKITVEKLGAKGKRGAGGGWKFMSLPDGSSRPLNE 366


>At3g04610.1 68416.m00493 KH domain-containing protein similar
           putative nucleic acid binding protein GB:CAB39665
           [Arabidopsis thaliana]; Pfam HMM hit: KH domain family
           of RNA binding proteins
          Length = 577

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
 Frame = +1

Query: 178 HHPNPAMRAPPNHD--YRDTLMKQKVAESVLQRVV---GEEAPKVLHKQFNSPI 324
           H+P P M+ PP HD  Y    M+Q   E    + +   G E P  +H     P+
Sbjct: 400 HNPPPYMQPPPRHDSYYPPPEMRQPPMEKQPHQGISAYGREPPMNVHVSSAPPM 453


>At1g52325.1 68414.m05906 hypothetical protein
          Length = 145

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 290 LRCCTSNSTLQSIYTRNRTLQTLSGSKLRLCQLTAI 397
           L CCT   T +S Y  + T  +L   K    QL+ +
Sbjct: 31  LECCTEEKTYRSFYVEDSTSSSLIFLKTLFLQLSEL 66


>At1g17130.1 68414.m02087 cell cycle control protein-related
           contains similarity to Swiss-Prot:Q9P7C5 cell cycle
           control protein cwf16 [Schizosaccharomyces pombe]
          Length = 331

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 9/37 (24%), Positives = 24/37 (64%)
 Frame = +1

Query: 58  QDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTES 168
           ++PK P+++ +S  P+++  + +    ++++P PT S
Sbjct: 264 ENPKEPKKQAISKQPFKSVHIKV----IKKQPQPTSS 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,653,954
Number of Sequences: 28952
Number of extensions: 262845
Number of successful extensions: 828
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)