Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30850
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               179   2e-45
SB_25665| Best HMM Match : TolA (HMM E-Value=1.7)                      32   0.41 
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.95 
SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_23808| Best HMM Match : zf-AN1 (HMM E-Value=5.5)                    28   6.7  
SB_21446| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  179 bits (435), Expect = 2e-45
 Identities = 83/161 (51%), Positives = 101/161 (62%)
 Frame = +1

Query: 1   GQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKI 180
           GQGAFGNMCRGGRMFAPTK WR+WH                          ARGH IEKI
Sbjct: 85  GQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRFAVCSALAASALPALIMARGHRIEKI 144

Query: 181 PELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 360
            E+PLV++D ++ + KT  AV  L+ + A+ D+ K   S+++RAGKGKMRNRR + RKGP
Sbjct: 145 AEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRKGP 204

Query: 361 LIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGR 483
           LII+N DQGL +AFRN+PGVE             PGGHLGR
Sbjct: 205 LIIYNNDQGLRQAFRNLPGVELQHVDRLNLLKLCPGGHLGR 245


>SB_25665| Best HMM Match : TolA (HMM E-Value=1.7)
          Length = 697

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
 Frame = -1

Query: 486 ETSKMTSRSQLQEVQLVNI--QELHTGDVAESASQTLILVEDYEGSLTLDTTTVAHFTLT 313
           +  +M  R QLQ++Q      Q+ H     +   Q  + ++  + S T DT+ V   +  
Sbjct: 290 QQQQMQQRQQLQQLQQQQQPQQQHHQQQQQQQQQQQQLFMQGIQLSST-DTSQVNMMSPL 348

Query: 312 STKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYNQGKLGNLFNNVSS 157
           S+ T ++  +    P L APQ++++L  + +LL     N   +  L + + S
Sbjct: 349 SSPTQQVNPIPLNSPILPAPQQNNTLQNIQNLLTISSQNPEAMQMLLSGLGS 400


>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1718

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +1

Query: 544 TPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 690
           TP++Q   F   + +++N D++RL  S+    + ++ N RVI+++   N
Sbjct: 802 TPTEQDAEFTANEAEVSNQDISRLSSSEPSPIIPKSINNRVIKSSALSN 850


>SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -1

Query: 342 TTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYNQ 193
           +T + HF     KT R +H+K        P E     GL+D+LD  G+ Q
Sbjct: 18  STVLHHFIDKHAKTPRFLHMKP-----NGPGEGGGSSGLLDMLDAAGFEQ 62


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +1

Query: 619 KSDEIRKVLRAPNKRV---IRATRKLNPLTNNKAMLKL 723
           +SD I K+    NK++   ++    L+ LTNNKA LKL
Sbjct: 27  QSDVIHKIPNEANKQIGLRVKCLALLDYLTNNKAQLKL 64


>SB_23808| Best HMM Match : zf-AN1 (HMM E-Value=5.5)
          Length = 165

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -1

Query: 417 TGDVAESASQTLILVEDYE--GSLTLDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQED 244
           T   AE+A +    +E+    G +   +      T  STK LR + LKDI  C+E    +
Sbjct: 99  TSAAAEAALEPFQDIEETSALGQILPSSVDAVRLTKASTK-LRDIELKDIERCIEV---E 154

Query: 243 DSLFG 229
           D+ FG
Sbjct: 155 DTAFG 159


>SB_21446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -1

Query: 417 TGDVAESASQTLILVEDYE--GSLTLDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQED 244
           T   AESA +    +E+    G +   +         STK LR + LKDI+ C+E    +
Sbjct: 97  TSAAAESALEPFQDIEETSALGQILPSSVDAVRLMKASTK-LRDIELKDIKRCIEV---E 152

Query: 243 DSLFG 229
           D+ FG
Sbjct: 153 DTAFG 157


>SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 704

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 390 QTLILVEDYEGSLTLDTTTVAHFTLTSTKTL 298
           Q LIL+  Y   + L+T+++  F+L S KT+
Sbjct: 235 QELILIPYYTEKVALETSSLIEFSLLSAKTI 265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,301,225
Number of Sequences: 59808
Number of extensions: 454347
Number of successful extensions: 1681
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1657
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)