Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30850
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 244 4e-65
U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p... 29 4.5
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical... 29 4.5
AF016679-4|AAB66158.1| 430|Caenorhabditis elegans Hypothetical ... 29 4.5
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p... 28 7.8
U23511-3|AAC46790.1| 636|Caenorhabditis elegans Small protein 6... 28 7.8
AF104017-1|AAD12261.1| 636|Caenorhabditis elegans serine-threon... 28 7.8
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 244 bits (598), Expect = 4e-65
Identities = 116/243 (47%), Positives = 155/243 (63%), Gaps = 1/243 (0%)
Frame = +1
Query: 1 GQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKI 180
GQGAFGNMCRGG MFAP K +RRWH QARGH+I+++
Sbjct: 87 GQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQV 146
Query: 181 PELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 360
E+PLVV+DKV+ KTK+AV+FLRR W+DI KVY S+R RAGKGK+RNR+ Q+ GP
Sbjct: 147 AEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGP 206
Query: 361 LIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSW 540
++I+ +D RAFRNIPGV+ APGGHLGR +IWT+SAF +LD ++G+
Sbjct: 207 VVIYGQDAECARAFRNIPGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIYGTT 266
Query: 541 KTPSKQ-KKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAML 717
S Q KK +++P P MAN+D +R+++S+E+ K +RAP K + NPL +
Sbjct: 267 VANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKKRTLLY 326
Query: 718 KLN 726
KLN
Sbjct: 327 KLN 329
>U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical
protein B0361.8 protein.
Length = 470
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -1
Query: 348 LDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYN 196
L+ +VA L TKT+RL+ + IRP + + L + + L+ +GYN
Sbjct: 265 LNIESVAESLLEDTKTVRLLSVGQIRPEKNHKLQLEVLHDVKEPLEKMGYN 315
>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 199 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 375
V V E+ KTK VI + LKA ++ +K K + R++A K M + P F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472
Query: 376 KD 381
KD
Sbjct: 473 KD 474
>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 199 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 375
V V E+ KTK VI + LKA ++ +K K + R++A K M + P F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472
Query: 376 KD 381
KD
Sbjct: 473 KD 474
>AF016679-4|AAB66158.1| 430|Caenorhabditis elegans Hypothetical
protein T28C12.3 protein.
Length = 430
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = -1
Query: 462 SQLQEVQLVNIQELHTG--DVAESASQTLILVEDYEGSLTLDTTTVAHFTL 316
S L+ + ++ LH + E + + L++++ +E + TL TTVA+F+L
Sbjct: 281 SLLKHFEPETLESLHIEILEFDEDSVKELVILDQWEEAKTLSLTTVAYFSL 331
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/64 (23%), Positives = 26/64 (40%)
Frame = +1
Query: 478 GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 657
G F+ T G F +TP + +N P+ A +++ +IR +L P
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848
Query: 658 KRVI 669
K +
Sbjct: 2849 KEFV 2852
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/64 (23%), Positives = 26/64 (40%)
Frame = +1
Query: 478 GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 657
G F+ T G F +TP + +N P+ A +++ +IR +L P
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848
Query: 658 KRVI 669
K +
Sbjct: 2849 KEFV 2852
>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
protein C29A12.4 protein.
Length = 1560
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -1
Query: 204 GYNQGKLGNL-FNNVSSSLNERWDASSSNGCCQGRSPLSEVDATVPAP 64
GY G + N+ N VS+ + + ++AS+S G G S +E+D P P
Sbjct: 614 GYT-GCIKNIRMNGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660
>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
protein F44D12.1 protein.
Length = 1034
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +2
Query: 479 DVSSSGLSPHSAGLTPYSG---HGRHHQNKRRTSTCPNRRWPTLTSHVFSSLMRSGRSSV 649
+ ++S P+S TP S G+ H+ S +PT+ SS+M S S
Sbjct: 532 NTTTSDARPYSMHFTPTSSTIMEGKPHRRSAVYSPSHPPVYPTIRDDSMSSVMSSSNSIR 591
Query: 650 LPTNA*SVLHAN*TRSPIT 706
LP+ + S + N + +T
Sbjct: 592 LPSTSFSNQYPNNSTCSLT 610
>U23511-3|AAC46790.1| 636|Caenorhabditis elegans Small protein 6
protein.
Length = 636
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = -1
Query: 489 DETSKMTSRS--QLQEVQLVNIQELHTGDV-AESASQT-LILVEDYEGSLTLDTTTVAHF 322
DE S R Q + NI + D+ +E S T ++L+ DY +L
Sbjct: 298 DEDSWKNERDVYQTNMINHENILQFVAADIWSEEDSMTKMLLITDYHELGSLSDYLCREE 357
Query: 321 TLTSTKTLRLVH 286
TLT+ + LRL+H
Sbjct: 358 TLTTDEALRLIH 369
>AF104017-1|AAD12261.1| 636|Caenorhabditis elegans serine-threonine
kinase SMA-6 protein.
Length = 636
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = -1
Query: 489 DETSKMTSRS--QLQEVQLVNIQELHTGDV-AESASQT-LILVEDYEGSLTLDTTTVAHF 322
DE S R Q + NI + D+ +E S T ++L+ DY +L
Sbjct: 298 DEDSWKNERDVYQTNMINHENILQFVAADIWSEEDSMTKMLLITDYHELGSLSDYLCREE 357
Query: 321 TLTSTKTLRLVH 286
TLT+ + LRL+H
Sbjct: 358 TLTTDEALRLIH 369
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,876,758
Number of Sequences: 27780
Number of extensions: 320329
Number of successful extensions: 1045
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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