Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30847
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.38 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    25   0.51 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.67 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.2  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 18/83 (21%), Positives = 37/83 (44%)
 Frame = +2

Query: 215  KKLAQVEEDLILNKNKLEQANKDLEEKEKQLTATEAEVAALNRKVQQIEEDLEKSEERSG 394
            K L  V +   +NK +   + K+   K+++ TAT  +    +RK Q+  E+ +   +   
Sbjct: 766  KALLPVIKPANVNKEQSPNSTKETTPKKERKTATTTQPVISSRKEQKKSEE-KNINDHCV 824

Query: 395  TAQQKLLEAQQSADENNRMCKVL 463
            T +Q ++    +   N     V+
Sbjct: 825  TTEQSVVVTNVTTTINTPTTSVI 847


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 71  TMDAIKKKMQAMKLEKDNAMDKADTCEQQARDANLRAEKVNEEVRELQKKLAQ-VEEDLI 247
           TMD   K  +  +++K + MD+ D   +  R  N    ++NE +  L  KL + +  D  
Sbjct: 503 TMDRTDKMSRIDRMDKIDRMDRMDRTNRMDR-MNRMNRQMNEYMMALSMKLQKFINNDYN 561

Query: 248 LNK 256
            N+
Sbjct: 562 FNE 564



 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/42 (21%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +2

Query: 71  TMDAIKKKMQAMKLEKDNAMDKADTCEQQARDANL-RAEKVN 193
           TMD + +  +  ++++ + MD+ DT ++  + + + R +K++
Sbjct: 479 TMDTMDRMDRMDRMDRMDRMDRMDTMDRTDKMSRIDRMDKID 520


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 296 PSLQGPCWPAPACSCSGSGLPPPGRASSGVRGLPRLPSQHG 174
           PS   P  P P  S + SG+PP       +  +P +PS  G
Sbjct: 411 PSAGAPMPPIPNMS-NMSGMPPLPNMPGSMPTMPTMPSMAG 450


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 482 DEERMDQLTNQLKEARLLAEDADGKSD 562
           D  R+D + +  ++ARLL E +  ++D
Sbjct: 218 DGFRIDAINHMFEDARLLDEPSANRTD 244


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 14/76 (18%), Positives = 33/76 (43%)
 Frame = +2

Query: 200 VRELQKKLAQVEEDLILNKNKLEQANKDLEEKEKQLTATEAEVAALNRKVQQIEEDLEKS 379
           +REL KK+  +     L+  KL       ++++ Q      +     + V   ++  ++ 
Sbjct: 385 LRELLKKIPDLRTLNTLHSEKLLAFKMTEQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQ 444

Query: 380 EERSGTAQQKLLEAQQ 427
           +++    QQ+  + QQ
Sbjct: 445 QQQQQQQQQQQQQQQQ 460


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
 Frame = -3

Query: 447 RLFSSA-DCWASSSFCWAV 394
           R F+SA D W+    CW V
Sbjct: 813 RKFTSASDVWSMGIVCWEV 831


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,506
Number of Sequences: 438
Number of extensions: 3634
Number of successful extensions: 35
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)