Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30846
(777 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 27 2.3
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 27 4.0
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 27 4.0
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar... 26 5.2
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 26 5.2
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 5.2
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 26 5.2
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 26 6.9
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 25 9.2
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 25 9.2
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +3
Query: 462 VKMFLGPKYDENGFPFSLEDNWMNFY----ELDWFVQKVNPGQSQI 587
+++FL P +G + +D W++FY E DW N G + +
Sbjct: 338 LRIFLFPAVLYSGLQWGAQDAWLSFYLTTEEEDWMEAPYNYGDNAV 383
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/34 (26%), Positives = 15/34 (44%)
Frame = +3
Query: 546 DWFVQKVNPGQSQITRSSTDFAFFKEDSLPMAEI 647
DW + K+ P ++T D FF + P +
Sbjct: 82 DWVIVKLGPSSGRVTGCEIDTTFFNGNHAPEVSV 115
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 552 FVQKVNPGQSQITRSSTDFAFFKEDSLPMAEIY 650
F+ VNP ++ TR + ++SLPMA Y
Sbjct: 258 FISSVNPLEADDTRETLSEGALVQESLPMAYSY 290
>SPAC3H5.04 |aar2||U5 snRNP-associated protein
Aar2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 405 HKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNW 527
H+ +ID S T ++ K L YDEN +PF +W
Sbjct: 58 HEDMKYSIDFDSKSETASLQK--LDVLYDENFYPFESTKDW 96
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 640 PKSTSSWTKGKIPTDMFNSSDTMPSRLMLP 729
P +TS K PTD + + +PSRL P
Sbjct: 429 PSATSPILKRSSPTDSISQNSGLPSRLTEP 458
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 8/43 (18%)
Frame = +3
Query: 378 YKVRQPRLNHKP--FTVTIDIKSDVATNAV---VKM---FLGP 482
Y+V++PRLN +P +T ++++ +A+N V VK+ FLGP
Sbjct: 554 YEVQRPRLNDRPPLYTARDEMETLLASNKVTDWVKLSEFFLGP 596
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 26.2 bits (55), Expect = 5.2
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 510 SLEDNWMNFYELDWFVQKVNPGQSQITRSSTDFAFFKEDSLPMAEIYKL--LDQGKDSY* 683
SL +N +N Y D + V G + + SST A E LP+ ++KL LD +++
Sbjct: 247 SLANN-LNLYSADGYAVDVFQGINNLNLSSTSLADVAE--LPVHTLHKLTFLDISENNIR 303
Query: 684 HVQLLGH 704
++ L H
Sbjct: 304 DIRSLDH 310
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 6.9
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = -3
Query: 667 PWSKSL*ISAIGKE-----SSLKNAKSVDERVI*DWPGLTFCTNQSSS*KFIQLSSRLKG 503
PWS++ S G +S+K+A + + I + L N + KF KG
Sbjct: 5 PWSRNFLCSCRGFSVCTPYASIKSASELALKNISELQALQKIQNHTEKLKFFSSKLHNKG 64
Query: 502 KPFSSYLG 479
+PF+ LG
Sbjct: 65 EPFTLQLG 72
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 25.4 bits (53), Expect = 9.2
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +3
Query: 288 KMVTFFDHF-DFDAFNTVYFSKEELKSSPHGYKVRQPRLNHKPFTVTIDIKSDVATNAVV 464
++V F F D +N+ + S + +K + L++K F + +++ TN+ V
Sbjct: 35 ELVVFATAFGDVSIYNSSFKSLQSIKVEDESSIQQILWLDNKTFLLFSNVEGGTGTNSTV 94
Query: 465 KMFLGPKYDENGFP 506
++ + DEN P
Sbjct: 95 IIYAFSQADENEPP 108
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 163 QPSTSSIKGLFNTSSNLNSTRYHTH--KKLFTSLV*KFPTSKST 288
QPS + + G + S N NS+R T+ ++ F+S P+S T
Sbjct: 41 QPSLNKLGGFSSASLNFNSSRSSTNDDQQTFSSQSDNLPSSPIT 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,893
Number of Sequences: 5004
Number of extensions: 57994
Number of successful extensions: 200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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