Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30846
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1430 - 27048055-27048408,27049674-27049841,27049927-270500...    36   0.047
07_01_0686 - 5184061-5184267,5184655-5184762,5185405-5185578,518...    29   3.1  
06_01_0093 - 776567-777335,777449-777747                               29   3.1  
03_02_0243 - 6744164-6744415,6744518-6745135                           29   5.4  
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375...    29   5.4  
09_03_0177 - 13120816-13120941,13121032-13121137,13121231-131213...    28   7.2  
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716...    28   9.5  

>08_02_1430 -
           27048055-27048408,27049674-27049841,27049927-27050042,
           27050153-27050305,27050850-27050993,27051052-27051211,
           27051332-27051970
          Length = 577

 Score = 35.5 bits (78), Expect = 0.047
 Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 8/156 (5%)
 Frame = +3

Query: 231 YTQEALHFVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSKEELKSSPH--GYKVRQPRLN 404
           + ++AL  V   +   +VDK V  F H D D     + S +EL    H  G  V +P + 
Sbjct: 398 FKKKALGVVARNLPGEEVDKYVQMFHHMDKD--KNGHLSLDELLEGLHINGQPVPEPEIR 455

Query: 405 ------HKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKV 566
                       T+D    V  +  +K     +Y    F +  +D    F ELD   ++V
Sbjct: 456 MLLEAADTDGNGTLDCDEFVTVSVHLKKMSNDEYLAAAFNYFDKDG-SGFIELDELREEV 514

Query: 567 NPGQSQITRSSTDFAFFKEDSLPMAEIYKLLDQGKD 674
            P +  I     D    K+  +   E   ++  G D
Sbjct: 515 GPNEQAILEILRDVDTDKDGRISYQEFELMMKSGAD 550


>07_01_0686 -
           5184061-5184267,5184655-5184762,5185405-5185578,
           5185680-5185808,5185891-5186178,5186341-5186570,
           5186619-5187516
          Length = 677

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 428 NCHSERLVV-KTWLTDLVTVRRALEFFFTEVDGVEGIEVEMVKECDHFVD 282
           N  +ER+ V KTW++ +      +  FF  + G + + VE+ KE + F D
Sbjct: 442 NHFAERMGVRKTWMSAVRNSPNVVARFFVALHGRKEVNVELKKEAEFFGD 491


>06_01_0093 - 776567-777335,777449-777747
          Length = 355

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 556 CKRLTLASLR*RVHLLTLHSSKKTLYRWPKSTSSWTKGKIPTD 684
           C  LT        HLL   S++ +L+ WP  + SW++ K+P +
Sbjct: 131 CGTLTAPITSPNSHLLI--SNRSSLFDWPVGSDSWSELKLPVN 171


>03_02_0243 - 6744164-6744415,6744518-6745135
          Length = 289

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 464 DDGVSGNIRFNINCHSERLVV 402
           D  VSG+ RF++ C  ERLVV
Sbjct: 87  DVRVSGSARFDVQCRGERLVV 107


>02_05_0008 +
           24934917-24935229,24936387-24936608,24936876-24937591,
           24937646-24937728,24938448-24938514,24938833-24939228,
           24939276-24939318,24939380-24939474,24940287-24940314,
           24940636-24940754
          Length = 693

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -2

Query: 344 EVDGVEGIEVEMVKECDHFVDFDVGNFQTNEVKSFLCVWYLVLFKF 207
           E+  ++  EV ++K C  F  F +   Q   +  +LC+ ++VL  +
Sbjct: 409 ELSRLDNPEVSLIKACLVFTTFSMALVQKCRLTQYLCLVFIVLVDY 454


>09_03_0177 -
           13120816-13120941,13121032-13121137,13121231-13121305,
           13121385-13121461,13122462-13122549,13122638-13122699,
           13122807-13122863,13122960-13123049,13123186-13123251,
           13123530-13123619,13123711-13123804,13123915-13124213
          Length = 409

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 165 AFYQLYKRIVQYIIEFKQYQVPYTQEALHFVGLKI 269
           A+    K    ++ EF+ ++ P+  EA+H V L+I
Sbjct: 91  AYSSFEKAANAFLQEFRNWETPWAMEAMHTVALEI 125


>01_03_0216 +
           13870364-13870472,13871406-13871477,13871603-13871668,
           13871767-13871823,13871917-13871984,13872068-13872149,
           13872445-13872500,13872645-13872947,13873042-13873128,
           13873199-13873373,13873481-13873602,13873689-13873852,
           13873925-13874179,13874312-13874433,13874542-13874663,
           13875111-13875259,13875346-13875484,13875715-13875750
          Length = 727

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 228 PYTQEALHFVGLKISDVKVDKMVTFF 305
           PYTQ AL FV L +   K+D+  T F
Sbjct: 506 PYTQSALLFVDLGMDVYKIDRACTKF 531


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,231,622
Number of Sequences: 37544
Number of extensions: 352983
Number of successful extensions: 975
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)