Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30846
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)               33   0.20 
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)                    31   1.0  
SB_57651| Best HMM Match : Homeobox (HMM E-Value=3e-29)                28   7.3  
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_6363| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.7  

>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
          Length = 690

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 21/71 (29%), Positives = 38/71 (53%)
 Frame = +3

Query: 453 NAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTDFAFFKEDSL 632
           N  V ++  PK  ++  P S+ D WM+ +E   FV+K+N  Q+ +  SS    F K+  +
Sbjct: 248 NESVLVWRAPKSSQDALPVSITDRWMSQHE---FVEKLNM-QAVLCASSHTDEFVKDFLI 303

Query: 633 PMAEIYKLLDQ 665
            + +I  L+ +
Sbjct: 304 TLEKIPVLIHE 314


>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
          Length = 2057

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +3

Query: 237 QEALHFVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSKEELKSSPHGYKVRQPRLNHK 410
           QE   F+ +K+SD  ++        FDFD+ + V  +KE  K S      ++PR   K
Sbjct: 640 QENEEFLDIKVSDESLETPQFQVTRFDFDSNSEVEKNKESSKRSLREKAAKRPRPRRK 697


>SB_57651| Best HMM Match : Homeobox (HMM E-Value=3e-29)
          Length = 294

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 6   TNADLFEEDFLQFYQRSYEVNARRVLGAAPKPFNQYTFIPSALDFYQTSARDPAFYQ 176
           T AD+F +D   FYQ+S   +   ++  +PK         SA   Y  S + P+ YQ
Sbjct: 54  TRADMFYQDPFLFYQQSPHYSPHNIVPPSPKYSPHLMGDCSAQSAYFVS-KQPSHYQ 109


>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 72  RRVLGAAPKPFNQ--YTFIPSALDFYQTSARDPAFYQLYKRIVQYIIEFKQYQVPY 233
           R VL A  KP+    Y F  +ALD ++T  +D   Y  +   + +  EF Q  + Y
Sbjct: 182 RYVLDALRKPYGSKMYMFGIAALDRFKTRLKDYPHYCQHLASIPHFKEFPQSLIEY 237


>SB_6363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
 Frame = +3

Query: 102 FNQYTFIPSALDFYQTSARDPAFYQLYKR-----IVQYIIEFKQYQVPYTQEALHFVGLK 266
           + QYT   + L + Q +     +   Y R       QY I + QY   YT+ ALH +   
Sbjct: 60  YRQYTSRNTLLAYTQYAIHYTQYATRYTRNALLAYTQYAINYTQYATCYTRNALHAIRFT 119

Query: 267 ISDVK 281
           +  ++
Sbjct: 120 LHAIR 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,191,731
Number of Sequences: 59808
Number of extensions: 409482
Number of successful extensions: 1095
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)