Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30845
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    58   1e-09
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    30   0.41 
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    29   0.54 
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    29   0.95 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.95 
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    29   0.95 
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    28   1.7  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    27   2.2  
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    27   3.8  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    26   5.0  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    26   5.0  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   6.7  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      25   8.8  
SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyce...    25   8.8  

>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
 Frame = +2

Query: 41  EHDKSPLENKMEPQQCCSKNEPI--KQPCILIFDSLAGASRSRVVATLRDYLTCE-YHVK 211
           E D+  + +  +P    ++   +    P ILIFDSLA   +   +  LR+YL  E +  K
Sbjct: 475 EQDEIVMSSVEQPSASKTRQAELTSNSPAILIFDSLANLHKG-ALNYLREYLLEEAFERK 533

Query: 212 VSPLKIFNKDNIKGSCLKIPQQNNFTDCGLYLLQYVEQFFKDP 340
              LK     +I+G   K+PQQ+NF+DCG+Y L +VE F + P
Sbjct: 534 NVHLK---STDIRGFHAKVPQQSNFSDCGIYALHFVELFLETP 573


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +2

Query: 131 FDSLAGASRSRVVATLRDYLTCEYH--VKVSPLKIFNKDNIKGSCLKIPQQNNFTDCGLY 304
           +DSLAG S  +V   LRDY   E    V VS  + F  DN        P+Q N  DCG++
Sbjct: 479 WDSLAG-SPGKVFDLLRDYYIAETKGAVDVSDWENFMDDNS-------PRQRNGHDCGVF 530

Query: 305 LLQYVE 322
             +  E
Sbjct: 531 ACKTAE 536


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 23/111 (20%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
 Frame = +2

Query: 308 LQYVEQFFKDPITDYTLPIKQLTNWFDEIVVTRKR----EEISNLLKS---LMNKYNPDS 466
           L+Y +Q     + ++   + +  +W +E ++   +     +I  L+++   +  KY+   
Sbjct: 14  LEYSQQLTNGKMKEFFFLVSETMDWLNEHMLEVSKLQLESDIYELVRTPTKIKEKYSTPR 73

Query: 467 HLTLPDITFPTLNGKL--IESEDNEECLEGERGNQNSIKKSEKDLETATLT 613
              +     PT   +L  I+ +  E  +EG +  +++  K  K+L TAT T
Sbjct: 74  LSPVHRCALPTPRMRLTSIQHQLEEAAVEGYKSGESNTVKEPKELHTATNT 124


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
 Frame = +2

Query: 107 IKQPCILIFDSLAGASRSRVVATLRDYLTCEYHVKVSPLKIFNKDNIKGSCLKIPQQNNF 286
           +  PC    D++      RVV     + T  +H   +P++++NK    G   + P Q   
Sbjct: 7   VSAPCFAFVDTIGSIGVCRVVR----FTT--FHN--TPIEVYNKKVNDGVWKRDPYQETA 58

Query: 287 TDCGLYLLQYVEQFFKDPITDYTLPIKQ--LTNWFDEIVVTRKREEISNLLKSL 442
                 L   +E + + PIT  ++P ++  + +W   +     R++   L  SL
Sbjct: 59  VKAINRLYTELESYTQPPITQDSMPAEKGSILSWISPLKKMFSRKKSPTLTSSL 112


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +2

Query: 329  FKDPITDYTLPIKQLTNWFDEIVVTRK--REEISNLLKSLMNKYNPD 463
            FKD  T+ + PI+  T + D++ +  +   EE  +L++  +N+ NPD
Sbjct: 1097 FKDQATETSHPIRLYTRYIDKVYIMFRFTDEESRDLIQRFLNE-NPD 1142


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +3

Query: 198 NTMLKYLLSKYSIRTISKGVALKYLSKTILQIVAYIYYSML 320
           N+++ ++       TISKGV LKYL +TI   V+ IY   L
Sbjct: 608 NSIVIFIDENSEASTISKGVVLKYL-ETISYKVSIIYLEKL 647


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +2

Query: 533 EECLEGERGNQNSIKKSEKDLETATLTFVKQIPSELVKRSFGDPSDGTIVRKTI 694
           EEC+      Q S    E   E   LT  K+IP   ++R   D +   ++R+T+
Sbjct: 600 EECITLYNNGQISTLNDE---EVVQLTLAKKIPLYALERVLKDVTRAVVIRRTV 650


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/88 (21%), Positives = 37/88 (42%)
 Frame = +2

Query: 191 TCEYHVKVSPLKIFNKDNIKGSCLKIPQQNNFTDCGLYLLQYVEQFFKDPITDYTLPIKQ 370
           T + ++ +  L I  K   +   +K PQQ N  DCGL++ +         +    +P   
Sbjct: 195 TNDCNLAIKNLGILLKKEFRVRHMKTPQQINDCDCGLHVCENTRILMYRLLQKPYVPKVD 254

Query: 371 LTNWFDEIVVTRKREEISNLLKSLMNKY 454
           +      +   R R+ +  ++ SL+  Y
Sbjct: 255 MNLDHSVVDSVRLRKALMEVITSLLAAY 282


>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 83  QCCSKNEPIKQPCILIFDSLAGASRSRVVATLRDYLTCE 199
           +C      I  PC+  FD+   ++ S+ V  LRD +T E
Sbjct: 278 ECFFSYAEIYFPCLHSFDAQLSSAASKCVQILRDIITNE 316


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 401 TRKREEISNLLKSLMNKYNPDSHLTLPDITF 493
           TRK   ++++  S +NKY P SHL LP I +
Sbjct: 119 TRKFRYLNSI--SDLNKYIPLSHLKLPPIVY 147


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
 Frame = +2

Query: 530 NEECLEGERGNQNSIKKSE----KDLETATLTFVKQIPSELVKRSFGDPSDGTIVRKTIR 697
           N+E L  E     S+  S      DL+   LT+     S L K  F DPS  ++V +TI 
Sbjct: 549 NKESLSNEMDYSKSLGTSSLEQVDDLDEK-LTYTPLYVSLLEKTPFTDPSIPSLVERTI- 606

Query: 698 IASDIENRSLV 730
           + ++++N   V
Sbjct: 607 VPAELQNEITV 617


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 189 LLVNTMLKYLLSKYSIRTISKGVALKY 269
           + ++T  KY+L KYSI T S  +A  Y
Sbjct: 411 IFMSTCYKYVLGKYSIPTESCFIATPY 437


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +2

Query: 203 HVKVSPLKIFNKDNIKGSCLKIPQQNNFTDCGLYLLQYVEQFF 331
           HV+V P +IF  ++     +++ Q++      +Y+ + V+ FF
Sbjct: 517 HVRVPPTRIFTINSAGEVHIELLQRSGHRSSYVYMNELVDHFF 559


>SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 97

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 497 TLNGKLIESEDNEEC 541
           T  GKLIE+EDN  C
Sbjct: 25  TYRGKLIEAEDNMNC 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,811,867
Number of Sequences: 5004
Number of extensions: 55480
Number of successful extensions: 211
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)